|
|
| when (GMT) | who | where | what |
| 2008-07-01 12:44 | mcschatz | src/Align/overlap-align.cc src/Align/Makefile.am |
Add simple tool for overlapping a pair of sequences |
| 2008-06-22 18:05 | mcschatz | src/bankViewer/TilingFrame.cc |
Make search case insensitive |
| 2008-06-22 08:53 | aphillippy | configure.ac |
version bump |
| 2008-06-22 08:49 | aphillippy | Makefile.am src/Align/Makefile.am src/Bank/Makefile.am src/Contig/Makefile.am src/Foundation/Makefile.am src/Foundation/Options.hh src/Persistant/Makefile.am src/Sim/Makefile.am src/Utils/Makefile.am src/Utils/recallConsensus.cc src/Validation/Makefile.am |
build compatability fixes |
| 2008-06-22 08:24 | aphillippy | config/amos.mk |
fixed deltafilter path problem |
| 2008-06-22 08:19 | aphillippy | src/Align/missing-reads.cc src/Foundation/ConfigFile.cc src/Foundation/Logger.cc src/Foundation/OptionResult.cc src/Foundation/Options.cc src/Sim/Makefile.am src/Utils/Makefile.am src/Utils/runAmos.cc src/bankViewer/HistogramWindow.cc |
gcc 4.3 fixes |
| 2008-06-12 14:25 | aphillippy | src/Casm/casm-layout.cc |
alignment parsing bug fix for concatenated delta files |
| 2008-06-12 08:12 | aphillippy | configure.ac |
configure.ac |
| 2008-06-04 10:41 | mcschatz | src/Utils/getlengths.pl |
read from stdin if no filename specified |
| 2008-05-30 12:40 | mcschatz | src/bankViewer/hawkeye.pro |
Update to include -L../DataStore |
| 2008-05-30 07:40 | mcschatz | src/Persistant/persistent-assembly.pl |
updates |
| 2008-05-30 07:39 | mcschatz | src/Validation/qc_combine.pl |
Improved |
| 2008-05-30 07:39 | mcschatz | src/PythonModules/AMOS.py |
Add acknowledgement |
| 2008-05-30 07:33 | aphillippy | configure.ac |
new version |
| 2008-05-30 07:28 | dxpuiu | README |
minimus2 pipeline description added |
| 2008-05-29 11:35 | mpop | configure.ac src/PythonModules/Makefile.am |
Fixed bug in PythonModules that was breaking installation. |
| 2008-05-21 12:41 | dxpuiu | configure.ac src/Pipeline/Makefile.am |
delta-filter, show-coords added |
| 2008-05-21 12:04 | dxpuiu | src/Bank/dumpreads.cc |
-M, -m options added |
| 2008-05-21 11:17 | dxpuiu | src/Utils/Makefile.am |
Added scripts to the list |
| 2008-05-21 11:06 | dxpuiu | src/Pipeline/Makefile.am |
minimus2.acf added |
| 2008-05-21 08:34 | dxpuiu | src/Pipeline/minimus2.acf |
minimus2: new pipeline for merging 2 assemblies |
| 2008-05-21 08:32 | dxpuiu | src/Utils/delta2clr.pl src/Utils/delta2cvg.pl src/Utils/nucmer2ovl.pl src/Utils/nucmerAnnotate.pl src/Utils/ovl2OVL.pl src/Utils/sort2.pl |
script updates for AMSOcmp-shortReads-alignmentTreimmed & minimus2 pipelines |
| 2008-04-22 06:38 | dxpuiu | src/Utils/Makefile.am |
updateDeltaClr.pl added |
| 2008-04-16 09:27 | mcschatz | src/PythonModules/Makefile.am src/Makefile.am |
Adding python AMOS message parser contributed by Paul Harrison |
| 2008-04-16 09:23 | mcschatz | src/PythonModules/AMOS.py |
Adding python AMOS message parser contributed by Paul Harrison |
Updated at Thu Jul 3 21:24:13 PDT 2008
Version 1.3.0 - May 2005