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AMOS::ContigEdge_t Member List

This is the complete list of members for AMOS::ContigEdge_t, including all inherited members.

ADJACENCY_BITAMOS::Link_t [protected, static]
ADJACENCY_BITSAMOS::Link_t [protected, static]
ALIGNMENTAMOS::Link_t [static]
ANTINORMALAMOS::Link_t [static]
ANTINORMAL_BITSAMOS::Link_t [protected, static]
clear()AMOS::ContigEdge_t [inline, virtual]
ContigEdge_t()AMOS::ContigEdge_t [inline]
ContigEdge_t(const ContigEdge_t &source)AMOS::ContigEdge_t [inline]
ContigLink_t()AMOS::ContigLink_t [inline]
ContigLink_t(const ContigLink_t &source)AMOS::ContigLink_t [inline]
eid_mAMOS::IBankable_t [protected]
flags_mAMOS::IBankable_t [protected]
flip()AMOS::Link_t
getAdjacency() constAMOS::Link_t
getComment() constAMOS::Universal_t [inline]
getContigLinks() constAMOS::ContigEdge_t [inline]
getContigLinks()AMOS::ContigEdge_t [inline]
getContigs() constAMOS::ContigLink_t [inline]
getEID() constAMOS::IBankable_t [inline]
getIID() constAMOS::IBankable_t [inline]
getLinks() constAMOS::IEdge_t [inline]
getLinks()AMOS::IEdge_t [inline]
getNCode() constAMOS::ContigEdge_t [inline, virtual]
getNodes() constAMOS::Link_t [inline]
getNodeType() constAMOS::ContigLink_t [inline]
getSD() constAMOS::Link_t [inline]
getSize() constAMOS::Link_t [inline]
getSource() constAMOS::Link_t [inline]
getStatus() constAMOS::Universal_t [inline]
getType() constAMOS::Link_t [inline]
IBankable_t()AMOS::IBankable_t [inline]
IBankable_t(const IBankable_t &source)AMOS::IBankable_t [inline]
IEdge_t()AMOS::IEdge_t [inline]
IEdge_t(const IEdge_t &source)AMOS::IEdge_t [inline]
iid_mAMOS::IBankable_t [protected]
IMessagable_t()AMOS::IMessagable_t [inline]
INNIEAMOS::Link_t [static]
INNIE_BITSAMOS::Link_t [protected, static]
isFlagA() constAMOS::IBankable_t [inline]
isFlagB() constAMOS::IBankable_t [inline]
isModified() constAMOS::IBankable_t [inline]
isRemoved() constAMOS::IBankable_t [inline]
Link_t()AMOS::Link_t [inline]
Link_t(const Link_t &source)AMOS::Link_t [inline]
MATEPAIRAMOS::Link_t [static]
NCODEAMOS::ContigEdge_t [static]
NORMALAMOS::Link_t [static]
NORMAL_BITSAMOS::Link_t [protected, static]
NULL_ADJACENCYAMOS::Link_t [static]
NULL_LINKAMOS::Link_t [static]
OTHERAMOS::Link_t [static]
OUTIEAMOS::Link_t [static]
OUTIE_BITSAMOS::Link_t [protected, static]
OVERLAPAMOS::Link_t [static]
PHYSICALAMOS::Link_t [static]
readMessage(const Message_t &msg)AMOS::ContigEdge_t [virtual]
readRecord(std::istream &fix, std::istream &var)AMOS::ContigEdge_t [protected, virtual]
setAdjacency(LinkAdjacency_t adj)AMOS::Link_t
setComment(const std::string &comment)AMOS::Universal_t [inline]
setContigLinks(const std::vector< ID_t > &links)AMOS::ContigEdge_t [inline]
setContigs(std::pair< ID_t, ID_t > contigs)AMOS::ContigLink_t [inline]
setEID(const std::string &eid)AMOS::IBankable_t [inline]
setFlagA(bool flag)AMOS::IBankable_t [inline]
setFlagB(bool flag)AMOS::IBankable_t [inline]
setIID(ID_t iid)AMOS::IBankable_t [inline]
setLinks(const std::vector< ID_t > &links)AMOS::IEdge_t [inline]
setNodes(std::pair< ID_t, ID_t > nods)AMOS::Link_t [inline]
setSD(SD_t sd)AMOS::Link_t [inline]
setSize(Size_t size)AMOS::Link_t [inline]
setSource(std::pair< ID_t, NCode_t > source)AMOS::Link_t [inline]
setStatus(Status_t status)AMOS::Universal_t [inline]
setType(LinkType_t type)AMOS::Link_t
SYNTENYAMOS::Link_t [static]
Universal_t()AMOS::Universal_t [inline]
Universal_t(const Universal_t &source)AMOS::Universal_t [inline]
writeMessage(Message_t &msg) constAMOS::ContigEdge_t [virtual]
writeRecord(std::ostream &fix, std::ostream &var) constAMOS::ContigEdge_t [protected, virtual]
~ContigEdge_t()AMOS::ContigEdge_t [inline]
~ContigLink_t()AMOS::ContigLink_t [inline]
~IBankable_t()AMOS::IBankable_t [inline, virtual]
~IEdge_t()AMOS::IEdge_t [inline, virtual]
~IMessagable_t()AMOS::IMessagable_t [inline, virtual]
~Link_t()AMOS::Link_t [inline]
~Universal_t()AMOS::Universal_t [inline, virtual]


Generated on Tue May 17 15:19:43 2005 for libAMOS by doxygen 1.3.8