| begin() | AMOS::Index_t | [inline] |
| begin() const | AMOS::Index_t | [inline] |
| buildContigFeature(const std::string bankname) | AMOS::Index_t | |
| buildContigScaffold(const std::string bankname) | AMOS::Index_t | |
| buildReadContig(const std::string bankname) | AMOS::Index_t | |
| buildReadLibrary(const std::string bankname) | AMOS::Index_t | |
| buildReadMate(const std::string bankname) | AMOS::Index_t | |
| buildScaffoldFeature(const std::string bankname) | AMOS::Index_t | |
| clear() | AMOS::Index_t | [inline, virtual] |
| const_iterator typedef | AMOS::Index_t | |
| count(ID_t key) const | AMOS::Index_t | [inline] |
| eid_m | AMOS::IBankable_t | [protected] |
| empty() const | AMOS::Index_t | [inline] |
| end() | AMOS::Index_t | [inline] |
| end() const | AMOS::Index_t | [inline] |
| flags_m | AMOS::IBankable_t | [protected] |
| getComment() const | AMOS::Universal_t | [inline] |
| getEID() const | AMOS::IBankable_t | [inline] |
| getIID() const | AMOS::IBankable_t | [inline] |
| getNCode() const | AMOS::Index_t | [inline, virtual] |
| getSize() const | AMOS::Index_t | [inline] |
| getStatus() const | AMOS::Universal_t | [inline] |
| getType() const | AMOS::Index_t | [inline] |
| IBankable_t() | AMOS::IBankable_t | [inline] |
| IBankable_t(const IBankable_t &source) | AMOS::IBankable_t | [inline] |
| iid_m | AMOS::IBankable_t | [protected] |
| IMessagable_t() | AMOS::IMessagable_t | [inline] |
| Index_t() | AMOS::Index_t | [inline] |
| Index_t(NCode_t a, NCode_t b) | AMOS::Index_t | [inline] |
| Index_t(const Index_t &source) | AMOS::Index_t | [inline] |
| insert(ID_t key, ID_t value) | AMOS::Index_t | [inline] |
| insert(std::pair< ID_t, ID_t > iids) | AMOS::Index_t | [inline] |
| isFlagA() const | AMOS::IBankable_t | [inline] |
| isFlagB() const | AMOS::IBankable_t | [inline] |
| isModified() const | AMOS::IBankable_t | [inline] |
| isMulti(ID_t key) const | AMOS::Index_t | [inline] |
| isRemoved() const | AMOS::IBankable_t | [inline] |
| iterator typedef | AMOS::Index_t | |
| lookup(ID_t key) const | AMOS::Index_t | [inline] |
| lookupAll(ID_t key) | AMOS::Index_t | [inline] |
| lookupAll(ID_t key) const | AMOS::Index_t | [inline] |
| NCODE | AMOS::Index_t | [static] |
| readMessage(const Message_t &msg) | AMOS::Index_t | [virtual] |
| readRecord(std::istream &fix, std::istream &var) | AMOS::Index_t | [protected, virtual] |
| remove(ID_t key) | AMOS::Index_t | [inline] |
| remove(iterator itr) | AMOS::Index_t | [inline] |
| setComment(const std::string &comment) | AMOS::Universal_t | [inline] |
| setEID(const std::string &eid) | AMOS::IBankable_t | [inline] |
| setFlagA(bool flag) | AMOS::IBankable_t | [inline] |
| setFlagB(bool flag) | AMOS::IBankable_t | [inline] |
| setIID(ID_t iid) | AMOS::IBankable_t | [inline] |
| setStatus(Status_t status) | AMOS::Universal_t | [inline] |
| setType(std::pair< NCode_t, NCode_t > type) | AMOS::Index_t | [inline] |
| setType(NCode_t a, NCode_t b) | AMOS::Index_t | [inline] |
| Universal_t() | AMOS::Universal_t | [inline] |
| Universal_t(const Universal_t &source) | AMOS::Universal_t | [inline] |
| writeMessage(Message_t &msg) const | AMOS::Index_t | [virtual] |
| writeRecord(std::ostream &fix, std::ostream &var) const | AMOS::Index_t | [protected, virtual] |
| ~IBankable_t() | AMOS::IBankable_t | [inline, virtual] |
| ~IMessagable_t() | AMOS::IMessagable_t | [inline, virtual] |
| ~Index_t() | AMOS::Index_t | [inline] |
| ~Universal_t() | AMOS::Universal_t | [inline, virtual] |
