ADENINE_BITS | AMOS::Kmer_t | [protected, static] |
clear() | AMOS::Kmer_t | [virtual] |
compress(char seqchar) | AMOS::Kmer_t | [inline, protected, static] |
CYTOSINE_BITS | AMOS::Kmer_t | [protected, static] |
eid_m | AMOS::IBankable_t | [protected] |
flags_m | AMOS::IBankable_t | [protected] |
getBase(Pos_t index) const | AMOS::Kmer_t | [inline] |
getComment() const | AMOS::Universal_t | [inline] |
getCount() const | AMOS::Kmer_t | [inline] |
getEID() const | AMOS::IBankable_t | [inline] |
getIID() const | AMOS::IBankable_t | [inline] |
getLength() const | AMOS::Kmer_t | [inline] |
getNCode() const | AMOS::Kmer_t | [inline, virtual] |
getReads() const | AMOS::Kmer_t | [inline] |
getReads() | AMOS::Kmer_t | [inline] |
getSeqString() const | AMOS::Kmer_t | |
getStatus() const | AMOS::Universal_t | [inline] |
GUANINE_BITS | AMOS::Kmer_t | [protected, static] |
IBankable_t() | AMOS::IBankable_t | [inline] |
IBankable_t(const IBankable_t &source) | AMOS::IBankable_t | [inline] |
iid_m | AMOS::IBankable_t | [protected] |
IMessagable_t() | AMOS::IMessagable_t | [inline] |
isFlagA() const | AMOS::IBankable_t | [inline] |
isFlagB() const | AMOS::IBankable_t | [inline] |
isModified() const | AMOS::IBankable_t | [inline] |
isRemoved() const | AMOS::IBankable_t | [inline] |
Kmer_t() | AMOS::Kmer_t | [inline] |
Kmer_t(const Kmer_t &source) | AMOS::Kmer_t | [inline] |
MAX_LENGTH | AMOS::Kmer_t | [static] |
NCODE | AMOS::Kmer_t | [static] |
operator++(int) | AMOS::Kmer_t | [inline] |
operator=(const Kmer_t &source) | AMOS::Kmer_t | |
readMessage(const Message_t &msg) | AMOS::Kmer_t | [virtual] |
readRecord(std::istream &fix, std::istream &var) | AMOS::Kmer_t | [protected, virtual] |
SEQ_BITS | AMOS::Kmer_t | [protected, static] |
setBase(char seqchar, Pos_t index) | AMOS::Kmer_t | [inline] |
setComment(const std::string &comment) | AMOS::Universal_t | [inline] |
setCount(uint32_t count) | AMOS::Kmer_t | [inline] |
setEID(const std::string &eid) | AMOS::IBankable_t | [inline] |
setFlagA(bool flag) | AMOS::IBankable_t | [inline] |
setFlagB(bool flag) | AMOS::IBankable_t | [inline] |
setIID(ID_t iid) | AMOS::IBankable_t | [inline] |
setReads(const std::vector< ID_t > &reads) | AMOS::Kmer_t | [inline] |
setSeqString(const std::string &seq) | AMOS::Kmer_t | |
setStatus(Status_t status) | AMOS::Universal_t | [inline] |
THYMINE_BITS | AMOS::Kmer_t | [protected, static] |
uncompress(uint8_t byte) | AMOS::Kmer_t | [inline, protected, static] |
Universal_t() | AMOS::Universal_t | [inline] |
Universal_t(const Universal_t &source) | AMOS::Universal_t | [inline] |
writeMessage(Message_t &msg) const | AMOS::Kmer_t | [virtual] |
writeRecord(std::ostream &fix, std::ostream &var) const | AMOS::Kmer_t | [protected, virtual] |
~IBankable_t() | AMOS::IBankable_t | [inline, virtual] |
~IMessagable_t() | AMOS::IMessagable_t | [inline, virtual] |
~Kmer_t() | AMOS::Kmer_t | [inline] |
~Universal_t() | AMOS::Universal_t | [inline, virtual] |