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AMOS::Kmer_t Member List

This is the complete list of members for AMOS::Kmer_t, including all inherited members.

ADENINE_BITSAMOS::Kmer_t [protected, static]
clear()AMOS::Kmer_t [virtual]
compress(char seqchar)AMOS::Kmer_t [inline, protected, static]
CYTOSINE_BITSAMOS::Kmer_t [protected, static]
eid_mAMOS::IBankable_t [protected]
flags_mAMOS::IBankable_t [protected]
getBase(Pos_t index) constAMOS::Kmer_t [inline]
getComment() constAMOS::Universal_t [inline]
getCount() constAMOS::Kmer_t [inline]
getEID() constAMOS::IBankable_t [inline]
getIID() constAMOS::IBankable_t [inline]
getLength() constAMOS::Kmer_t [inline]
getNCode() constAMOS::Kmer_t [inline, virtual]
getReads() constAMOS::Kmer_t [inline]
getReads()AMOS::Kmer_t [inline]
getSeqString() constAMOS::Kmer_t
getStatus() constAMOS::Universal_t [inline]
GUANINE_BITSAMOS::Kmer_t [protected, static]
IBankable_t()AMOS::IBankable_t [inline]
IBankable_t(const IBankable_t &source)AMOS::IBankable_t [inline]
iid_mAMOS::IBankable_t [protected]
IMessagable_t()AMOS::IMessagable_t [inline]
isFlagA() constAMOS::IBankable_t [inline]
isFlagB() constAMOS::IBankable_t [inline]
isModified() constAMOS::IBankable_t [inline]
isRemoved() constAMOS::IBankable_t [inline]
Kmer_t()AMOS::Kmer_t [inline]
Kmer_t(const Kmer_t &source)AMOS::Kmer_t [inline]
MAX_LENGTHAMOS::Kmer_t [static]
NCODEAMOS::Kmer_t [static]
operator++(int)AMOS::Kmer_t [inline]
operator=(const Kmer_t &source)AMOS::Kmer_t
readMessage(const Message_t &msg)AMOS::Kmer_t [virtual]
readRecord(std::istream &fix, std::istream &var)AMOS::Kmer_t [protected, virtual]
SEQ_BITSAMOS::Kmer_t [protected, static]
setBase(char seqchar, Pos_t index)AMOS::Kmer_t [inline]
setComment(const std::string &comment)AMOS::Universal_t [inline]
setCount(uint32_t count)AMOS::Kmer_t [inline]
setEID(const std::string &eid)AMOS::IBankable_t [inline]
setFlagA(bool flag)AMOS::IBankable_t [inline]
setFlagB(bool flag)AMOS::IBankable_t [inline]
setIID(ID_t iid)AMOS::IBankable_t [inline]
setReads(const std::vector< ID_t > &reads)AMOS::Kmer_t [inline]
setSeqString(const std::string &seq)AMOS::Kmer_t
setStatus(Status_t status)AMOS::Universal_t [inline]
THYMINE_BITSAMOS::Kmer_t [protected, static]
uncompress(uint8_t byte)AMOS::Kmer_t [inline, protected, static]
Universal_t()AMOS::Universal_t [inline]
Universal_t(const Universal_t &source)AMOS::Universal_t [inline]
writeMessage(Message_t &msg) constAMOS::Kmer_t [virtual]
writeRecord(std::ostream &fix, std::ostream &var) constAMOS::Kmer_t [protected, virtual]
~IBankable_t()AMOS::IBankable_t [inline, virtual]
~IMessagable_t()AMOS::IMessagable_t [inline, virtual]
~Kmer_t()AMOS::Kmer_t [inline]
~Universal_t()AMOS::Universal_t [inline, virtual]


Generated on Tue May 17 15:19:47 2005 for libAMOS by doxygen 1.3.8