Main Page | Namespace List | Class Hierarchy | Class List | File List | Namespace Members | Class Members | File Members | Related Pages

AMOS::Read_t Member List

This is the complete list of members for AMOS::Read_t, including all inherited members.

ADENINE_BITSAMOS::Sequence_t [protected, static]
BACAMOS::Read_t [static]
clear()AMOS::Read_t [virtual]
compress(char seqchar, char qualchar)AMOS::Sequence_t [inline, protected, static]
compress()AMOS::Sequence_t
COMPRESS_BITAMOS::Sequence_t [protected, static]
CONTIGAMOS::Read_t [static]
CYTOSINE_BITSAMOS::Sequence_t [protected, static]
eid_mAMOS::IBankable_t [protected]
ENDAMOS::Read_t [static]
flags_mAMOS::IBankable_t [protected]
getBase(Pos_t index) constAMOS::Sequence_t [inline]
getBasePositions() constAMOS::Read_t [inline]
getBasePositions()AMOS::Read_t [inline]
getClearRange()AMOS::Read_t [inline]
getComment() constAMOS::Universal_t [inline]
getEID() constAMOS::IBankable_t [inline]
getFragment() constAMOS::Read_t [inline]
getFragmentPosition()AMOS::Read_t [inline]
getIID() constAMOS::IBankable_t [inline]
getLength() constAMOS::Sequence_t [inline]
getNCode() constAMOS::Read_t [inline, virtual]
getQualityClearRange()AMOS::Read_t [inline]
getQualString() constAMOS::Sequence_t [inline]
getQualString(Range_t range) constAMOS::Sequence_t
getSeqString() constAMOS::Sequence_t [inline]
getSeqString(Range_t range) constAMOS::Sequence_t
getStatus() constAMOS::Universal_t [inline]
getType() constAMOS::Read_t [inline]
getVectorClearRange()AMOS::Read_t [inline]
GUANINE_BITSAMOS::Sequence_t [protected, static]
IBankable_t()AMOS::IBankable_t [inline]
IBankable_t(const IBankable_t &source)AMOS::IBankable_t [inline]
iid_mAMOS::IBankable_t [protected]
IMessagable_t()AMOS::IMessagable_t [inline]
isCompressed() constAMOS::Sequence_t [inline]
isFlagA() constAMOS::IBankable_t [inline]
isFlagB() constAMOS::IBankable_t [inline]
isModified() constAMOS::IBankable_t [inline]
isRemoved() constAMOS::IBankable_t [inline]
length_mAMOS::Sequence_t [protected]
NCODEAMOS::Read_t [static]
NULL_READAMOS::Read_t [static]
operator=(const Sequence_t &source)AMOS::Sequence_t
OTHERAMOS::Read_t [static]
QUAL_BITSAMOS::Sequence_t [protected, static]
qual_mAMOS::Sequence_t [protected]
Read_t()AMOS::Read_t [inline]
Read_t(const Read_t &source)AMOS::Read_t [inline]
readMessage(const Message_t &msg)AMOS::Read_t [virtual]
readRecord(std::istream &fix, std::istream &var)AMOS::Read_t [protected, virtual]
SEQ_BITSAMOS::Sequence_t [protected, static]
seq_mAMOS::Sequence_t [protected]
Sequence_t()AMOS::Sequence_t [inline]
Sequence_t(const Sequence_t &source)AMOS::Sequence_t [inline]
setBase(char seqchar, char qualchar, Pos_t index)AMOS::Sequence_t [inline]
setBasePositions(const std::vector< int16_t > &bcp)AMOS::Read_t [inline]
setClearRange(Range_t clear)AMOS::Read_t [inline]
setComment(const std::string &comment)AMOS::Universal_t [inline]
setEID(const std::string &eid)AMOS::IBankable_t [inline]
setFlagA(bool flag)AMOS::IBankable_t [inline]
setFlagB(bool flag)AMOS::IBankable_t [inline]
setFragment(ID_t frag)AMOS::Read_t [inline]
setFragmentPosition(Pos_t pos)AMOS::Read_t [inline]
setIID(ID_t iid)AMOS::IBankable_t [inline]
setQualityClearRange(Range_t qclear)AMOS::Read_t [inline]
setSequence(const char *seq, const char *qual)AMOS::Sequence_t
setSequence(const std::string &seq, const std::string &qual)AMOS::Sequence_t
setStatus(Status_t status)AMOS::Universal_t [inline]
setType(ReadType_t type)AMOS::Read_t
setVectorClearRange(Range_t vclear)AMOS::Read_t [inline]
THYMINE_BITSAMOS::Sequence_t [protected, static]
TRANSPOSONAMOS::Read_t [static]
uncompress(uint8_t byte)AMOS::Sequence_t [inline, protected, static]
uncompress()AMOS::Sequence_t
Universal_t()AMOS::Universal_t [inline]
Universal_t(const Universal_t &source)AMOS::Universal_t [inline]
WALKAMOS::Read_t [static]
writeMessage(Message_t &msg) constAMOS::Read_t [virtual]
writeRecord(std::ostream &fix, std::ostream &var) constAMOS::Read_t [protected, virtual]
~IBankable_t()AMOS::IBankable_t [inline, virtual]
~IMessagable_t()AMOS::IMessagable_t [inline, virtual]
~Read_t()AMOS::Read_t [inline]
~Sequence_t()AMOS::Sequence_t [inline, virtual]
~Universal_t()AMOS::Universal_t [inline, virtual]


Generated on Tue May 17 15:19:50 2005 for libAMOS by doxygen 1.3.8