AMOS::Scaffold_t Member List

This is the complete list of members for AMOS::Scaffold_t, including all inherited members.

clear()	AMOS::Scaffold_t	[inline, virtual]
eid_m	AMOS::IBankable_t	[protected]
flags_m	AMOS::IBankable_t	[protected]
getComment() const	AMOS::Universal_t	[inline]
getContigEdges() const	AMOS::Scaffold_t	[inline]
getContigEdges()	AMOS::Scaffold_t	[inline]
getContigTiling() const	AMOS::Scaffold_t	[inline]
getContigTiling()	AMOS::Scaffold_t	[inline]
getEID() const	AMOS::IBankable_t	[inline]
getIID() const	AMOS::IBankable_t	[inline]
getNCode() const	AMOS::Scaffold_t	[inline, virtual]
getSpan() const	AMOS::Scaffold_t
getStatus() const	AMOS::Universal_t	[inline]
IBankable_t()	AMOS::IBankable_t	[inline]
IBankable_t(const IBankable_t &source)	AMOS::IBankable_t	[inline]
iid_m	AMOS::IBankable_t	[protected]
IMessagable_t()	AMOS::IMessagable_t	[inline]
isFlagA() const	AMOS::IBankable_t	[inline]
isFlagB() const	AMOS::IBankable_t	[inline]
isModified() const	AMOS::IBankable_t	[inline]
isRemoved() const	AMOS::IBankable_t	[inline]
NCODE	AMOS::Scaffold_t	[static]
readMessage(const Message_t &msg)	AMOS::Scaffold_t	[virtual]
readRecord(std::istream &fix, std::istream &var)	AMOS::Scaffold_t	[protected, virtual]
Scaffold_t()	AMOS::Scaffold_t	[inline]
Scaffold_t(const Scaffold_t &source)	AMOS::Scaffold_t	[inline]
setComment(const std::string &comment)	AMOS::Universal_t	[inline]
setContigEdges(const std::vector< ID_t > &edges)	AMOS::Scaffold_t	[inline]
setContigTiling(const std::vector< Tile_t > &contigs)	AMOS::Scaffold_t	[inline]
setContigTiling(const Layout_t &layout)	AMOS::Scaffold_t	[inline]
setEID(const std::string &eid)	AMOS::IBankable_t	[inline]
setFlagA(bool flag)	AMOS::IBankable_t	[inline]
setFlagB(bool flag)	AMOS::IBankable_t	[inline]
setIID(ID_t iid)	AMOS::IBankable_t	[inline]
setStatus(Status_t status)	AMOS::Universal_t	[inline]
Universal_t()	AMOS::Universal_t	[inline]
Universal_t(const Universal_t &source)	AMOS::Universal_t	[inline]
writeMessage(Message_t &msg) const	AMOS::Scaffold_t	[virtual]
writeRecord(std::ostream &fix, std::ostream &var) const	AMOS::Scaffold_t	[protected, virtual]
~IBankable_t()	AMOS::IBankable_t	[inline, virtual]
~IMessagable_t()	AMOS::IMessagable_t	[inline, virtual]
~Scaffold_t()	AMOS::Scaffold_t	[inline]
~Universal_t()	AMOS::Universal_t	[inline, virtual]

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