| clear() | AMOS::Scaffold_t | [inline, virtual] |
| eid_m | AMOS::IBankable_t | [protected] |
| flags_m | AMOS::IBankable_t | [protected] |
| getComment() const | AMOS::Universal_t | [inline] |
| getContigEdges() const | AMOS::Scaffold_t | [inline] |
| getContigEdges() | AMOS::Scaffold_t | [inline] |
| getContigTiling() const | AMOS::Scaffold_t | [inline] |
| getContigTiling() | AMOS::Scaffold_t | [inline] |
| getEID() const | AMOS::IBankable_t | [inline] |
| getIID() const | AMOS::IBankable_t | [inline] |
| getNCode() const | AMOS::Scaffold_t | [inline, virtual] |
| getSpan() const | AMOS::Scaffold_t | |
| getStatus() const | AMOS::Universal_t | [inline] |
| IBankable_t() | AMOS::IBankable_t | [inline] |
| IBankable_t(const IBankable_t &source) | AMOS::IBankable_t | [inline] |
| iid_m | AMOS::IBankable_t | [protected] |
| IMessagable_t() | AMOS::IMessagable_t | [inline] |
| isFlagA() const | AMOS::IBankable_t | [inline] |
| isFlagB() const | AMOS::IBankable_t | [inline] |
| isModified() const | AMOS::IBankable_t | [inline] |
| isRemoved() const | AMOS::IBankable_t | [inline] |
| NCODE | AMOS::Scaffold_t | [static] |
| readMessage(const Message_t &msg) | AMOS::Scaffold_t | [virtual] |
| readRecord(std::istream &fix, std::istream &var) | AMOS::Scaffold_t | [protected, virtual] |
| Scaffold_t() | AMOS::Scaffold_t | [inline] |
| Scaffold_t(const Scaffold_t &source) | AMOS::Scaffold_t | [inline] |
| setComment(const std::string &comment) | AMOS::Universal_t | [inline] |
| setContigEdges(const std::vector< ID_t > &edges) | AMOS::Scaffold_t | [inline] |
| setContigTiling(const std::vector< Tile_t > &contigs) | AMOS::Scaffold_t | [inline] |
| setContigTiling(const Layout_t &layout) | AMOS::Scaffold_t | [inline] |
| setEID(const std::string &eid) | AMOS::IBankable_t | [inline] |
| setFlagA(bool flag) | AMOS::IBankable_t | [inline] |
| setFlagB(bool flag) | AMOS::IBankable_t | [inline] |
| setIID(ID_t iid) | AMOS::IBankable_t | [inline] |
| setStatus(Status_t status) | AMOS::Universal_t | [inline] |
| Universal_t() | AMOS::Universal_t | [inline] |
| Universal_t(const Universal_t &source) | AMOS::Universal_t | [inline] |
| writeMessage(Message_t &msg) const | AMOS::Scaffold_t | [virtual] |
| writeRecord(std::ostream &fix, std::ostream &var) const | AMOS::Scaffold_t | [protected, virtual] |
| ~IBankable_t() | AMOS::IBankable_t | [inline, virtual] |
| ~IMessagable_t() | AMOS::IMessagable_t | [inline, virtual] |
| ~Scaffold_t() | AMOS::Scaffold_t | [inline] |
| ~Universal_t() | AMOS::Universal_t | [inline, virtual] |
