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AMOS::Scaffold_t Member List

This is the complete list of members for AMOS::Scaffold_t, including all inherited members.

clear()AMOS::Scaffold_t [inline, virtual]
eid_mAMOS::IBankable_t [protected]
flags_mAMOS::IBankable_t [protected]
getComment() constAMOS::Universal_t [inline]
getContigEdges() constAMOS::Scaffold_t [inline]
getContigEdges()AMOS::Scaffold_t [inline]
getContigTiling() constAMOS::Scaffold_t [inline]
getContigTiling()AMOS::Scaffold_t [inline]
getEID() constAMOS::IBankable_t [inline]
getIID() constAMOS::IBankable_t [inline]
getNCode() constAMOS::Scaffold_t [inline, virtual]
getSpan() constAMOS::Scaffold_t
getStatus() constAMOS::Universal_t [inline]
IBankable_t()AMOS::IBankable_t [inline]
IBankable_t(const IBankable_t &source)AMOS::IBankable_t [inline]
iid_mAMOS::IBankable_t [protected]
IMessagable_t()AMOS::IMessagable_t [inline]
isFlagA() constAMOS::IBankable_t [inline]
isFlagB() constAMOS::IBankable_t [inline]
isModified() constAMOS::IBankable_t [inline]
isRemoved() constAMOS::IBankable_t [inline]
NCODEAMOS::Scaffold_t [static]
readMessage(const Message_t &msg)AMOS::Scaffold_t [virtual]
readRecord(std::istream &fix, std::istream &var)AMOS::Scaffold_t [protected, virtual]
Scaffold_t()AMOS::Scaffold_t [inline]
Scaffold_t(const Scaffold_t &source)AMOS::Scaffold_t [inline]
setComment(const std::string &comment)AMOS::Universal_t [inline]
setContigEdges(const std::vector< ID_t > &edges)AMOS::Scaffold_t [inline]
setContigTiling(const std::vector< Tile_t > &contigs)AMOS::Scaffold_t [inline]
setContigTiling(const Layout_t &layout)AMOS::Scaffold_t [inline]
setEID(const std::string &eid)AMOS::IBankable_t [inline]
setFlagA(bool flag)AMOS::IBankable_t [inline]
setFlagB(bool flag)AMOS::IBankable_t [inline]
setIID(ID_t iid)AMOS::IBankable_t [inline]
setStatus(Status_t status)AMOS::Universal_t [inline]
Universal_t()AMOS::Universal_t [inline]
Universal_t(const Universal_t &source)AMOS::Universal_t [inline]
writeMessage(Message_t &msg) constAMOS::Scaffold_t [virtual]
writeRecord(std::ostream &fix, std::ostream &var) constAMOS::Scaffold_t [protected, virtual]
~IBankable_t()AMOS::IBankable_t [inline, virtual]
~IMessagable_t()AMOS::IMessagable_t [inline, virtual]
~Scaffold_t()AMOS::Scaffold_t [inline]
~Universal_t()AMOS::Universal_t [inline, virtual]


Generated on Tue May 17 15:19:50 2005 for libAMOS by doxygen 1.3.8