Bambus - Revision history

Dmb000006: See it!

2011-03-02T11:03:11Z

See it!

2011-01-07T15:00:57Z

2009-07-08T19:36:13Z

2009-07-08T19:34:24Z

← Older revision		Revision as of 11:03, 2 March 2011
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−	Note: Bambus is undergoing a transition in order to be integrated with the AMOS package. Please stay tuned for a new and improved release!	+	Note: Bambus is undergoing a transition in order to be integrated with the AMOS package. Please stay tuned for a new and improved release! See '''[[Bambus2]]'''.

← Older revision		Revision as of 15:00, 7 January 2011
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	== Acknowledgements ==		== Acknowledgements ==
	The development of BAMBUS was supported by the National Science Foundation under grant KDI-9980088.		The development of BAMBUS was supported by the National Science Foundation under grant KDI-9980088.
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		+	[[Category:Bambus]]

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 {| align="right"
   | __TOC__
   |}
-[[Image:BambusLogo.jpg]]
+{| align="left"
 Bambus is the first general purpose scaffolder that is publicly available as an open source package. While most other scaffolders are closely tied to a specific assembly program, Bambus accepts the output from most current assemblers and provides the user with great flexibility in choosing the scaffolding parameters. In particular, Bambus is able to accept contig linking data other than specified by mate-pairs. Such sources of information include alignment to a reference genome (Bambus can directly use the output of MUMmer), physical mapping data, or information about gene synteny.

@@ Line 1: / Line 1: @@
 {| align="right"
-  | [[Image:BambusLogo.jpg]]
   | __TOC__
   |}
 Bambus is the first general purpose scaffolder that is publicly available as an open source package. While most other scaffolders are closely tied to a specific assembly program, Bambus accepts the output from most current assemblers and provides the user with great flexibility in choosing the scaffolding parameters. In particular, Bambus is able to accept contig linking data other than specified by mate-pairs. Such sources of information include alignment to a reference genome (Bambus can directly use the output of MUMmer), physical mapping data, or information about gene synteny.