Difference between revisions of "Bambus.details"
From AMOS WIKI
(New page: Scaffold scaff_18 5 contigs 64636 bases 64636 span contig_asm_2 (5213, 22162) ====> v:9 l:2 o:0 ====> contig_asm_5 (22162, 28307) Valid: library lib_small: TBCNK26.y1 ...) |
|||
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
Scaffold scaff_18 5 contigs 64636 bases 64636 span | Scaffold scaff_18 5 contigs 64636 bases 64636 span | ||
| − | + | ||
| − | + | ||
contig_asm_2 (5213, 22162) ====> v:9 l:2 o:0 ====> contig_asm_5 (22162, 28307) | contig_asm_2 (5213, 22162) ====> v:9 l:2 o:0 ====> contig_asm_5 (22162, 28307) | ||
Valid: | Valid: | ||
| Line 18: | Line 18: | ||
TBCNA14.y1 16141 16485 ---> ... 6077 ... <--- 4546 5269 TBCNA14.x1 | TBCNA14.y1 16141 16485 ---> ... 6077 ... <--- 4546 5269 TBCNA14.x1 | ||
TBCNH07.y1 14391 14909 ---> ... 4031 ... <--- 965 1473 TBCNH07.x1 | TBCNH07.y1 14391 14909 ---> ... 4031 ... <--- 965 1473 TBCNH07.x1 | ||
| − | + | ||
| − | + | ||
contig_asm_1 (28307, 53330) ====> v:7 l:1 o:0 ====> contig_asm_7 (53330, 64636) | contig_asm_1 (28307, 53330) ====> v:7 l:1 o:0 ====> contig_asm_7 (53330, 64636) | ||
Valid: | Valid: | ||
| Line 33: | Line 33: | ||
library lib_small: | library lib_small: | ||
TBCNH53.x1 22624 23166 ---> ... 5179 ... <--- 2185 2780 TBCNH53.y1 | TBCNH53.x1 22624 23166 ---> ... 5179 ... <--- 2185 2780 TBCNH53.y1 | ||
| − | + | ||
| − | + | ||
contig_asm_10 (0, 5213) ====> v:14 l:5 o:0 ====> contig_asm_2 (5213, 22162) | contig_asm_10 (0, 5213) ====> v:14 l:5 o:0 ====> contig_asm_2 (5213, 22162) | ||
Valid: | Valid: | ||
| Line 59: | Line 59: | ||
TBCNH21.x1 2274 2853 ---> ... 4396 ... <--- 963 1457 TBCNH21.y1 | TBCNH21.x1 2274 2853 ---> ... 4396 ... <--- 963 1457 TBCNH21.y1 | ||
TBCNF85.x1 1199 1816 ---> ... 4702 ... <--- 9 688 TBCNF85.y1 | TBCNF85.x1 1199 1816 ---> ... 4702 ... <--- 9 688 TBCNF85.y1 | ||
| − | + | ||
| − | + | ||
contig_asm_5 (22162, 28307) ====> v:11 l:0 o:0 ====> contig_asm_1 (28307, 53330) | contig_asm_5 (22162, 28307) ====> v:11 l:0 o:0 ====> contig_asm_1 (28307, 53330) | ||
Valid: | Valid: | ||
| Line 75: | Line 75: | ||
TBCNF40.y1 4374 4943 ---> ... 3321 ... <--- 1058 1550 TBCNF40.x1 | TBCNF40.y1 4374 4943 ---> ... 3321 ... <--- 1058 1550 TBCNF40.x1 | ||
TBCNF86.x1 5290 5815 ---> ... 2677 ... <--- 1263 1822 TBCNF86.y1 | TBCNF86.x1 5290 5815 ---> ... 2677 ... <--- 1263 1822 TBCNF86.y1 | ||
| − | + | ||
Scaffold scaff_16 5 contigs 40247 bases 40247 span | Scaffold scaff_16 5 contigs 40247 bases 40247 span | ||
| − | + | ||
| − | + | ||
contig_asm_8 (0, 3939) ====> v:19 l:1 o:0 <==== contig_asm_4 (3939, 19334) | contig_asm_8 (0, 3939) ====> v:19 l:1 o:0 <==== contig_asm_4 (3939, 19334) | ||
Valid: | Valid: | ||
| Line 104: | Line 104: | ||
library lib_small: | library lib_small: | ||
TBCNG04.x1 3422 3909 ---> ... 4009 ... <--- 11903 12437 TBCNG04.y1 | TBCNG04.x1 3422 3909 ---> ... 4009 ... <--- 11903 12437 TBCNG04.y1 | ||
| − | + | ||
| − | + | ||
contig_asm_6 (19334, 36694) ====> v:7 l:0 o:0 ====> contig_asm_11 (38251, 40247) | contig_asm_6 (19334, 36694) ====> v:7 l:0 o:0 ====> contig_asm_11 (38251, 40247) | ||
Valid: | Valid: | ||
| Line 116: | Line 116: | ||
TBCNF14.x1 15892 16492 ---> ... 3858 ... <--- 362 833 TBCNF14.y1 | TBCNF14.x1 15892 16492 ---> ... 3858 ... <--- 362 833 TBCNF14.y1 | ||
TBCNJ01.x1 16622 16932 ---> ... 3427 ... <--- 783 1132 TBCNJ01.y1 | TBCNJ01.x1 16622 16932 ---> ... 3427 ... <--- 783 1132 TBCNJ01.y1 | ||
| − | + | ||
| − | + | ||
contig_asm_4 (3939, 19334) <==== v:6 l:0 o:0 ====> contig_asm_6 (19334, 36694) | contig_asm_4 (3939, 19334) <==== v:6 l:0 o:0 ====> contig_asm_6 (19334, 36694) | ||
Valid: | Valid: | ||
| Line 127: | Line 127: | ||
TBCNE58.y1 649 1295 ---> ... 3406 ... <--- 1543 2111 TBCNE58.x1 | TBCNE58.y1 649 1295 ---> ... 3406 ... <--- 1543 2111 TBCNE58.x1 | ||
TBCNF71.x1 655 1299 ---> ... 2663 ... <--- 698 1364 TBCNF71.y1 | TBCNF71.x1 655 1299 ---> ... 2663 ... <--- 698 1364 TBCNF71.y1 | ||
| − | + | ||
| − | + | ||
contig_asm_6 (19334, 36694) ====> v:7 l:0 o:0 ====> contig_asm_13 (36694, 38251) | contig_asm_6 (19334, 36694) ====> v:7 l:0 o:0 ====> contig_asm_13 (36694, 38251) | ||
Valid: | Valid: | ||
| Line 139: | Line 139: | ||
TBCNL66.x1 15846 16548 ---> ... 3024 ... <--- 810 1510 TBCNL66.y1 | TBCNL66.x1 15846 16548 ---> ... 3024 ... <--- 810 1510 TBCNL66.y1 | ||
TBCNE93.x1 15902 16586 ---> ... 2852 ... <--- 821 1394 TBCNE93.y1 | TBCNE93.x1 15902 16586 ---> ... 2852 ... <--- 821 1394 TBCNE93.y1 | ||
| − | + | ||
Scaffold scaff_14 2 contigs 36971 bases 36971 span | Scaffold scaff_14 2 contigs 36971 bases 36971 span | ||
| − | + | ||
| − | + | ||
contig_asm_9 (0, 9649) ====> v:15 l:4 o:0 ====> contig_asm_3 (9649, 36971) | contig_asm_9 (0, 9649) ====> v:15 l:4 o:0 ====> contig_asm_3 (9649, 36971) | ||
Valid: | Valid: | ||
| Line 167: | Line 167: | ||
TBCNE92.x1 6994 7459 ---> ... 4055 ... <--- 721 1400 TBCNE92.y1 | TBCNE92.x1 6994 7459 ---> ... 4055 ... <--- 721 1400 TBCNE92.y1 | ||
TBCNI65.y1 5871 6454 ---> ... 4477 ... <--- 73 699 TBCNI65.x1 | TBCNI65.y1 5871 6454 ---> ... 4477 ... <--- 73 699 TBCNI65.x1 | ||
| − | + | ||
Scaffold scaff_15 1 contigs 7121 bases 7121 span | Scaffold scaff_15 1 contigs 7121 bases 7121 span | ||
| − | + | ||
Scaffold scaff_17 1 contigs 1239 bases 1239 span | Scaffold scaff_17 1 contigs 1239 bases 1239 span | ||
Latest revision as of 21:06, 8 July 2009
Scaffold scaff_18 5 contigs 64636 bases 64636 span
contig_asm_2 (5213, 22162) ====> v:9 l:2 o:0 ====> contig_asm_5 (22162, 28307)
Valid:
library lib_small:
TBCNK26.y1 16239 16820 ---> ... 3947 ... <--- 2618 3237 TBCNK26.x1
TBCNH87.y1 14734 14845 ---> ... 2921 ... <--- 531 706 TBCNH87.x1
TBCNJ31.y1 15359 15868 ---> ... 3490 ... <--- 1293 1900 TBCNJ31.x1
TBCNA83.x1 15183 15932 ---> ... 3926 ... <--- 1538 2160 TBCNA83.y1
TBCNE82.y1 14504 15190 ---> ... 3207 ... <--- 88 762 TBCNE82.x1
TBCNE88.y1 15172 15873 ---> ... 3100 ... <--- 696 1323 TBCNE88.x1
TBCNE51.y1 16146 16714 ---> ... 3241 ... <--- 1869 2438 TBCNE51.x1
TBCNJ09.y1 14994 15564 ---> ... 3955 ... <--- 1456 2000 TBCNJ09.x1
TBCNH70.y1 16303 16724 ---> ... 3084 ... <--- 1813 2438 TBCNH70.x1
Invalid length:
library lib_small:
TBCNA14.y1 16141 16485 ---> ... 6077 ... <--- 4546 5269 TBCNA14.x1
TBCNH07.y1 14391 14909 ---> ... 4031 ... <--- 965 1473 TBCNH07.x1
contig_asm_1 (28307, 53330) ====> v:7 l:1 o:0 ====> contig_asm_7 (53330, 64636)
Valid:
library lib_small:
TBCNJ68.y1 24459 25001 ---> ... 2843 ... <--- 1738 2279 TBCNJ68.x1
TBCNA75.y1 24098 24409 ---> ... 2845 ... <--- 1188 1920 TBCNA75.x1
TBCNC26.x1 22953 23550 ---> ... 3033 ... <--- 326 963 TBCNC26.y1
TBCNG35.y1 24291 24959 ---> ... 3104 ... <--- 1724 2372 TBCNG35.x1
TBCNC76.y1 23725 24381 ---> ... 2450 ... <--- 580 1152 TBCNC76.x1
TBCNE22.x1 23185 23399 ---> ... 2400 ... <--- 1 562 TBCNE22.y1
TBCNG17.y1 23920 24376 ---> ... 2920 ... <--- 1327 1817 TBCNG17.x1
Invalid length:
library lib_small:
TBCNH53.x1 22624 23166 ---> ... 5179 ... <--- 2185 2780 TBCNH53.y1
contig_asm_10 (0, 5213) ====> v:14 l:5 o:0 ====> contig_asm_2 (5213, 22162)
Valid:
library lib_small:
TBCNJ44.x1 4216 4738 ---> ... 3358 ... <--- 1849 2361 TBCNJ44.y1
TBCNH74.y1 2962 3100 ---> ... 3723 ... <--- 1019 1472 TBCNH74.x1
TBCNL46.x1 3733 3870 ---> ... 3793 ... <--- 2089 2313 TBCNL46.y1
TBCNA92.y1 2113 2322 ---> ... 3900 ... <--- 177 800 TBCNA92.x1
TBCNB42.y1 4574 5143 ---> ... 3950 ... <--- 2633 3311 TBCNB42.x1
TBCNB75.x1 2356 2902 ---> ... 3598 ... <--- 190 741 TBCNB75.y1
TBCNC49.y1 2274 2944 ---> ... 3648 ... <--- 30 709 TBCNC49.x1
TBCNG02.x1 3054 3425 ---> ... 3728 ... <--- 1192 1569 TBCNG02.y1
TBCNF65.y1 3037 3651 ---> ... 3590 ... <--- 796 1414 TBCNF65.x1
TBCNG40.y1 4600 5061 ---> ... 3545 ... <--- 2325 2932 TBCNG40.x1
TBCNG44.y1 2903 3442 ---> ... 3761 ... <--- 814 1451 TBCNG44.x1
TBCNF82.x1 3028 3566 ---> ... 3989 ... <--- 1149 1804 TBCNF82.y1
TBCNG56.y1 4216 4726 ---> ... 3678 ... <--- 2029 2681 TBCNG56.x1
TBCNK11.x1 3544 4282 ---> ... 3314 ... <--- 1054 1645 TBCNK11.y1
Invalid length:
library lib_small:
TBCNK23.y1 2584 3306 ---> ... 4326 ... <--- 984 1697 TBCNK23.x1
TBCNK27.y1 4028 4658 ---> ... 4187 ... <--- 2319 3002 TBCNK27.x1
TBCNB15.x1 4407 4958 ---> ... 4501 ... <--- 3109 3695 TBCNB15.y1
TBCNH21.x1 2274 2853 ---> ... 4396 ... <--- 963 1457 TBCNH21.y1
TBCNF85.x1 1199 1816 ---> ... 4702 ... <--- 9 688 TBCNF85.y1
contig_asm_5 (22162, 28307) ====> v:11 l:0 o:0 ====> contig_asm_1 (28307, 53330)
Valid:
library lib_small:
TBCNA10.x1 5391 5948 ---> ... 3080 ... <--- 2006 2326 TBCNA10.y1
TBCNJ56.y1 3578 4202 ---> ... 3434 ... <--- 338 867 TBCNJ56.x1
TBCNJ57.x1 5515 6078 ---> ... 2845 ... <--- 1586 2215 TBCNJ57.y1
TBCNK32.x1 4434 5164 ---> ... 2914 ... <--- 445 1203 TBCNK32.y1
TBCNL09.x1 4035 4814 ---> ... 3148 ... <--- 280 1038 TBCNL09.y1
TBCNC27.y1 4949 5588 ---> ... 3018 ... <--- 1360 1822 TBCNC27.x1
TBCNG69.x1 5030 5439 ---> ... 2895 ... <--- 1477 1780 TBCNG69.y1
TBCNH10.x1 4306 4832 ---> ... 2978 ... <--- 664 1139 TBCNH10.y1
TBCNH12.y1 5131 5621 ---> ... 2785 ... <--- 1170 1771 TBCNH12.x1
TBCNF40.y1 4374 4943 ---> ... 3321 ... <--- 1058 1550 TBCNF40.x1
TBCNF86.x1 5290 5815 ---> ... 2677 ... <--- 1263 1822 TBCNF86.y1
Scaffold scaff_16 5 contigs 40247 bases 40247 span
contig_asm_8 (0, 3939) ====> v:19 l:1 o:0 <==== contig_asm_4 (3939, 19334)
Valid:
library lib_small:
TBCNI55.y1 3240 3825 ---> ... 3820 ... <--- 12274 12866 TBCNI55.x1
TBCNA23.y1 2666 2792 ---> ... 2999 ... <--- 13669 14384 TBCNA23.x1
TBCNK42.x1 1515 2079 ---> ... 3702 ... <--- 14117 14688 TBCNK42.y1
TBCNJ79.x1 2470 3133 ---> ... 3164 ... <--- 13700 14302 TBCNJ79.y1
TBCNA93.x1 2549 3196 ---> ... 2758 ... <--- 14027 14522 TBCNA93.y1
TBCNA51.x1 3219 3864 ---> ... 3708 ... <--- 12407 12806 TBCNA51.y1
TBCNB25.x1 1438 1652 ---> ... 3122 ... <--- 14774 15366 TBCNB25.y1
TBCNE35.x1 1242 1682 ---> ... 3662 ... <--- 14430 15070 TBCNE35.y1
TBCNL61.x1 3325 3937 ---> ... 2912 ... <--- 13097 13673 TBCNL61.y1
TBCNF52.x1 3422 3890 ---> ... 2905 ... <--- 13007 13663 TBCNF52.y1
TBCNC28.x1 1932 2526 ---> ... 3645 ... <--- 13757 14384 TBCNC28.y1
TBCNI14.x1 2374 2835 ---> ... 2949 ... <--- 14011 14460 TBCNI14.y1
TBCNF72.y1 3336 3937 ---> ... 2780 ... <--- 13218 13767 TBCNF72.x1
TBCNG74.x1 2042 2512 ---> ... 2845 ... <--- 14447 14921 TBCNG74.y1
TBCNH28.x1 3452 3908 ---> ... 3368 ... <--- 12514 13002 TBCNH28.y1
TBCNJ04.y1 3271 3675 ---> ... 3893 ... <--- 12170 12663 TBCNJ04.x1
TBCNI07.x1 2051 2543 ---> ... 3043 ... <--- 14240 14757 TBCNI07.y1
TBCNJ10.x1 2151 2699 ---> ... 3775 ... <--- 13408 13938 TBCNJ10.y1
TBCNJ42.y1 2458 3097 ---> ... 3757 ... <--- 13119 13721 TBCNJ42.x1
Invalid length:
library lib_small:
TBCNG04.x1 3422 3909 ---> ... 4009 ... <--- 11903 12437 TBCNG04.y1
contig_asm_6 (19334, 36694) ====> v:7 l:0 o:0 ====> contig_asm_11 (38251, 40247)
Valid:
library lib_small:
TBCNJ21.x1 16554 17133 ---> ... 3860 ... <--- 964 1497 TBCNJ21.y1
TBCNB30.y1 16447 17129 ---> ... 3077 ... <--- 1 607 TBCNB30.x1
TBCNL76.x1 16301 16976 ---> ... 3919 ... <--- 659 1303 TBCNL76.y1
TBCNC17.x1 16637 17261 ---> ... 3980 ... <--- 1170 1700 TBCNC17.y1
TBCNL85.y1 16352 16784 ---> ... 3727 ... <--- 632 1162 TBCNL85.x1
TBCNF14.x1 15892 16492 ---> ... 3858 ... <--- 362 833 TBCNF14.y1
TBCNJ01.x1 16622 16932 ---> ... 3427 ... <--- 783 1132 TBCNJ01.y1
contig_asm_4 (3939, 19334) <==== v:6 l:0 o:0 ====> contig_asm_6 (19334, 36694)
Valid:
library lib_small:
TBCNL01.y1 649 1232 ---> ... 3306 ... <--- 1510 2074 TBCNL01.x1
TBCNK77.y1 118 789 ---> ... 3242 ... <--- 1749 2453 TBCNK77.x1
TBCNE36.y1 1303 1955 ---> ... 3324 ... <--- 701 1369 TBCNE36.x1
TBCNG24.x1 806 1481 ---> ... 2651 ... <--- 512 1170 TBCNG24.y1
TBCNE58.y1 649 1295 ---> ... 3406 ... <--- 1543 2111 TBCNE58.x1
TBCNF71.x1 655 1299 ---> ... 2663 ... <--- 698 1364 TBCNF71.y1
contig_asm_6 (19334, 36694) ====> v:7 l:0 o:0 ====> contig_asm_13 (36694, 38251)
Valid:
library lib_small:
TBCNK28.x1 14485 15131 ---> ... 3527 ... <--- 67 652 TBCNK28.y1
TBCNK66.y1 14510 15129 ---> ... 3519 ... <--- 1 669 TBCNK66.x1
TBCNL88.x1 15527 16181 ---> ... 3374 ... <--- 898 1541 TBCNL88.y1
TBCNE78.x1 15723 16245 ---> ... 2886 ... <--- 628 1249 TBCNE78.y1
TBCNB85.x1 14363 15006 ---> ... 3888 ... <--- 223 891 TBCNB85.y1
TBCNL66.x1 15846 16548 ---> ... 3024 ... <--- 810 1510 TBCNL66.y1
TBCNE93.x1 15902 16586 ---> ... 2852 ... <--- 821 1394 TBCNE93.y1
Scaffold scaff_14 2 contigs 36971 bases 36971 span
contig_asm_9 (0, 9649) ====> v:15 l:4 o:0 ====> contig_asm_3 (9649, 36971)
Valid:
library lib_small:
TBCNI86.y1 7445 7866 ---> ... 3606 ... <--- 924 1402 TBCNI86.x1
TBCNL10.y1 8442 9049 ---> ... 3044 ... <--- 1100 1837 TBCNL10.x1
TBCNA31.y1 8875 9305 ---> ... 3734 ... <--- 2210 2960 TBCNA31.x1
TBCNL72.y1 8773 9385 ---> ... 3206 ... <--- 1612 2330 TBCNL72.x1
TBCNC40.y1 8218 8873 ---> ... 3889 ... <--- 1960 2458 TBCNC40.x1
TBCNC45.x1 7255 7730 ---> ... 3433 ... <--- 529 1039 TBCNC45.y1
TBCNF05.x1 7332 7864 ---> ... 3469 ... <--- 529 1152 TBCNF05.y1
TBCNF09.y1 8740 9361 ---> ... 3237 ... <--- 1612 2328 TBCNF09.x1
TBCNC70.y1 6584 7263 ---> ... 3966 ... <--- 193 901 TBCNC70.x1
TBCNC73.y1 7958 8625 ---> ... 3341 ... <--- 976 1650 TBCNC73.x1
TBCNH15.y1 8985 9352 ---> ... 3410 ... <--- 2295 2746 TBCNH15.x1
TBCNI21.x1 8397 8935 ---> ... 3864 ... <--- 2048 2612 TBCNI21.y1
TBCNJ33.x1 8424 8974 ---> ... 3380 ... <--- 1538 2155 TBCNJ33.y1
TBCNG93.x1 8218 8847 ---> ... 3837 ... <--- 1768 2406 TBCNG93.y1
TBCNK10.y1 7534 8181 ---> ... 2885 ... <--- 1 770 TBCNK10.x1
Invalid length:
library lib_small:
TBCNH85.y1 8655 9049 ---> ... 4437 ... <--- 2863 3443 TBCNH85.x1
TBCNC84.y1 8063 8737 ---> ... 4198 ... <--- 1982 2612 TBCNC84.x1
TBCNE92.x1 6994 7459 ---> ... 4055 ... <--- 721 1400 TBCNE92.y1
TBCNI65.y1 5871 6454 ---> ... 4477 ... <--- 73 699 TBCNI65.x1
Scaffold scaff_15 1 contigs 7121 bases 7121 span
Scaffold scaff_17 1 contigs 1239 bases 1239 span
