User contributions
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- 15:02, 7 January 2011 (diff | hist) . . (-54) . . Bambus Manual (→Untangling scaffolds) (current)
- 15:01, 7 January 2011 (diff | hist) . . (+22) . . N Category:Bambus (Created page with 'Pages about Bambus') (current)
- 15:00, 7 January 2011 (diff | hist) . . (+22) . . Bambus
- 14:58, 7 January 2011 (diff | hist) . . (+22) . . Bambus Manual
- 14:57, 7 January 2011 (diff | hist) . . (+35) . . Bambus/printScaff (current)
- 14:54, 7 January 2011 (diff | hist) . . (+2,071) . . N Bambus/printScaff (Fixing 'internal links' to point back at the bambus manual)
- 14:49, 7 January 2011 (diff | hist) . . (+16) . . Bambus Manual (Making an entry for the .lib file and correcting a within page link to that entry.)
- 14:48, 7 January 2011 (diff | hist) . . (+62) . . Bambus Manual (→.dot file)
- 13:30, 7 January 2011 (diff | hist) . . (-1,881) . . Bambus Manual (→Getting more (or less) information from the output: Moving printScaff description onto a dedicated page. Wikis are good like this.)
- 16:17, 16 December 2010 (diff | hist) . . (+41) . . Bambus 2.0/quick start guide (→Running Bambus 2.0: +formattting)
- 16:16, 16 December 2010 (diff | hist) . . (-166) . . Bambus 2.0/quick start guide (→How to run Bambus 2.0: May as well convert links to the wiki into wiki links)
- 15:26, 16 December 2010 (diff | hist) . . (-2) . . Bambus Manual (→Getting more (or less) information from the output)
- 15:15, 16 December 2010 (diff | hist) . . (+35) . . Bambus Manual (→Using assembler output: Found an error I'm cautious to fix)
- 15:14, 16 December 2010 (diff | hist) . . (+43) . . Bambus Manual (→Getting more (or less) information from the output)
- 15:08, 16 December 2010 (diff | hist) . . (-3) . . Bambus Manual (→Getting more (or less) information from the output: I'm fairly sure that that was a formatting error)
- 15:06, 16 December 2010 (diff | hist) . . (-2) . . Bambus Manual (→The .mates file: More tabs. Minor formatting changes)
- 15:03, 16 December 2010 (diff | hist) . . (+115) . . Bambus Manual (→The .mates file: Putting tabs in the examples instead of spaces. Changing formatting slightly and emphasising the phrase about tabs. fixed a few typos.)
- 14:04, 16 December 2010 (diff | hist) . . (+40) . . AMOS Getting Started (Adding this header to the download section should make the equivelent section in the installation section more visible... I guess...)
- 14:02, 16 December 2010 (diff | hist) . . (-24) . . AMOS Getting Started (Switching out the explicit right aligned TOC for the equivelent template call)
- 14:01, 16 December 2010 (diff | hist) . . (-28) . . m Template:TOC (current)
- 13:58, 16 December 2010 (diff | hist) . . (+148) . . N Template:TOC (Templates are good)
- 13:27, 16 December 2010 (diff | hist) . . (+1) . . Bambus 2.0/quick start guide (→Outputs)
- 11:37, 16 December 2010 (diff | hist) . . (+30) . . User talk:Dmb000006 (current)
- 11:36, 16 December 2010 (diff | hist) . . (+31) . . N User talk:Dmb000006 (Created page with 'Get me at: dan.bolser@gmail.com')
- 11:34, 16 December 2010 (diff | hist) . . (+43) . . N User:Dmb000006 (Created page with 'http://openwetware.org/wiki/User:Dan_Bolser') (current)
- 11:33, 16 December 2010 (diff | hist) . . (+21) . . N Bambus 2.0 (Redirected page to Bambus2) (current)
- 11:31, 16 December 2010 (diff | hist) . . (+5,633) . . N Bambus 2.0/quick start guide (Created page with 'This is a copy of the Bambus 2 user guide taken (and improved) from here: http://www.cbcb.umd.edu/software/bambus/doc/HowToBambus2.pdf See also: http://www.cbcb.umd.edu/software…')
- 11:20, 16 December 2010 (diff | hist) . . (+60) . . Bambus2
- 09:14, 16 December 2010 (diff | hist) . . (+550) . . N Bambus2 (Created page with 'Getting data into Bambus 2 can be a pain. Here is my recipe: toAmos \ -s my.fa \ -c my.contig \ -m my.mates \ -o my.afg You need the .fa to list the contigs withi…')
- 18:12, 14 December 2010 (diff | hist) . . (+19) . . ToAmos (→Options: link for gde-like format contig file)
- 18:11, 14 December 2010 (diff | hist) . . (+63) . . ToAmos
- 18:10, 14 December 2010 (diff | hist) . . (+102) . . Bank2contig (Link to contig formats and wp style) (current)
- 18:06, 14 December 2010 (diff | hist) . . (-51) . . ToAmos (The -i option is decribed in it's own section below)
- 18:04, 14 December 2010 (diff | hist) . . (+140) . . ToAmos (→Known issues)
- 18:02, 14 December 2010 (diff | hist) . . (+32) . . ToAmos (→Options)
- 18:02, 14 December 2010 (diff | hist) . . (+974) . . ToAmos (→Options: Updating and tabulating. please check!)
- 17:48, 14 December 2010 (diff | hist) . . (+185) . . ToAmos (→Synopsis: Updating to latest synopsis... hope that's OK...)
- 11:40, 13 December 2010 (diff | hist) . . (+4) . . Bambus Manual
- 18:46, 3 December 2009 (diff | hist) . . (+54) . . Minimus2 (current)
- 17:35, 28 October 2009 (diff | hist) . . (+57) . . Figaro (Added a link to the download site. Hello again btw :-)) (current)
- 09:30, 31 July 2009 (diff | hist) . . (-2) . . Minimus/README (→Output: Fixed a documentaion bug reported by Mark Miller)
- 08:56, 31 July 2009 (diff | hist) . . (+432) . . Minimus (→Examples: For me, having a simple example to quickly refer to while working at the cmd line is essential. I added a simple example here, along with a few questions!)
- 08:47, 31 July 2009 (diff | hist) . . (+1) . . Minimus/README (→Example: Hey hey!)
- 08:47, 31 July 2009 (diff | hist) . . (-19) . . Minimus/README (→Brief Summary)
- 08:46, 31 July 2009 (diff | hist) . . (+4,059) . . N Minimus/README (paste)
- 08:44, 31 July 2009 (diff | hist) . . (+24) . . Minimus (→Documentation: Its a pain to jump around for information)
- 11:20, 30 July 2009 (diff | hist) . . (+1,040) . . N Bank-transact (Something is better than nothing... right?) (current)
- 15:04, 29 July 2009 (diff | hist) . . (+82) . . Hawkeye (→Launching Hawkeye: I got confused by reading this because there was more space between the (following) exdample and the text for the previous example. I swapped round the text to my preference.)
- 13:44, 29 July 2009 (diff | hist) . . (+58) . . N Celera Assembler (Shame these wikis can't be merged.) (current)
- 17:04, 28 July 2009 (diff | hist) . . (-4) . . Bambus Manual (→Using MUMmer links: I removed the '-a' switch for the nucmer cmd. I don't know the '-a' was supposed to be doing originally, but it's not a valid option currently (version 3.06).)
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