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- ABBA
- AMOS
- AMOSLib
- AMOS Documentation Project
- AMOS Getting Started
- AMOS Utilities
- AMOScmp
- AMOScmp-shortReads
- AMOScmp-shortReads-alignmentTrimmed
- Amos2ace
- Amosvalidate
- AutoEditor
- Bambus.conf
- Bambus.details
- Bambus.dtd
- Bambus.evidence.xml
- Bambus.mates
- Bambus.oo
- Bambus.out.xml
- Bambus.stats
- Bambus.sum
- Bambus2
- Bambus 2.0/goBambus-perl
- Bambus 2.0/quick start guide
- Bank-transact
- Bank2contig
- Benchmark
- Ca2ace
- Celera Assembler
- Cygwin installation
- Debian installation
- Dumpreads
- FRCurve
- FastqQC
- Fedora installation
- Figaro
- Figaro Simulated Data
- Figaro User Manual
- File conversion utilities
- Hawkeye
- Hawkeye Contig View
- Hawkeye Launch Pad
- Hawkeye Scaffold View
- Infrastructure
- KI Overlapper
- LibAMOS Quick Reference
- MUMmer
- Message Grammar
- Message Types
- Minimo