User contributions
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- 20:48, 12 July 2009 (diff | hist) . . (+1,658) . . N Figaro Simulated Data (New page: Image:FigaroPoissonDistsFigure.jpg We have tested Figaro on simulated and real read data. Here we provide all simulated data that is discussed in our paper. To create a test in wh...) (current)
- 20:45, 12 July 2009 (diff | hist) . . (+5,278) . . N Figaro User Manual (New page: The following is a quick how-to for using Figaro. If you have any questions/comments/ suggestions, please email: amos-help [at] lists.sourceforge.net. == Installation == 1. Untar/...)
- 20:39, 12 July 2009 (diff | hist) . . (+13) . . Figaro
- 17:59, 9 July 2009 (diff | hist) . . (-1) . . Figaro
- 17:58, 9 July 2009 (diff | hist) . . (+70) . . Figaro
- 17:57, 9 July 2009 (diff | hist) . . (+5) . . Figaro
- 17:57, 9 July 2009 (diff | hist) . . (+557) . . Figaro
- 17:52, 9 July 2009 (diff | hist) . . (+26) . . Figaro
- 17:51, 9 July 2009 (diff | hist) . . (0) . . N File:FigaroLogo.png (current)
- 17:51, 9 July 2009 (diff | hist) . . (+25) . . Figaro
- 21:31, 8 July 2009 (diff | hist) . . (-2) . . Wiki guide
- 21:14, 8 July 2009 (diff | hist) . . (-5) . . Bambus Manual
- 21:13, 8 July 2009 (diff | hist) . . (-46) . . Bambus Manual
- 21:12, 8 July 2009 (diff | hist) . . (-4) . . Bambus Manual
- 21:09, 8 July 2009 (diff | hist) . . (+945) . . N Bambus.dtd (New page: <!-- DTD for the Grouper scaffold file --> <!-- (c) 2001 The Institute for Genomic Research. --> <!ELEMENT GROUPING (SCAFFOLD*, UNUSED?)> ...) (current)
- 21:08, 8 July 2009 (diff | hist) . . (+16) . . Bambus Manual
- 21:06, 8 July 2009 (diff | hist) . . (+1) . . Bambus.details (current)
- 21:06, 8 July 2009 (diff | hist) . . (+21) . . Bambus.details
- 21:04, 8 July 2009 (diff | hist) . . (+7,708) . . N Bambus.sum (New page: scaff_739 11 228793 231515 scaff_743 100 188056 76619 scaff_855 7 185453 186647 scaff_732 10 177544 180479 scaff_792 9 165922 167326 scaff_744 8 118509 119581 scaff_810 4 115873 117...) (current)
- 21:04, 8 July 2009 (diff | hist) . . (+20,487) . . N Bambus.oo (New page: >scaff_739 11 228793 231515 contig_71291 EB contig_71998 BE contig_72041 BE contig_71999 BE contig_71344 BE contig_71294 EB contig_72083 BE contig_71701 BE contig_72000 BE conti...) (current)
- 21:03, 8 July 2009 (diff | hist) . . (+10,606) . . N Bambus.details (New page: Scaffold scaff_18 5 contigs 64636 bases 64636 span contig_asm_2 (5213, 22162) ====> v:9 l:2 o:0 ====> contig_asm_5 (22162, 28307) Valid: library lib_small: TBCNK26.y1 ...)
- 21:02, 8 July 2009 (diff | hist) . . (+767) . . N Bambus.stats (New page: Genome size: 5100000 no. scaffolds: 335 total scaffold size: 5155860 min scaffold size: 155 max scaffold size: 228793 avg scaffold size: 15390.63 N50 scaffold size: 68671 total...) (current)
- 21:01, 8 July 2009 (diff | hist) . . (-8) . . Bambus.evidence.xml (current)
- 21:00, 8 July 2009 (diff | hist) . . (+8,337) . . N Bambus.out.xml (New page: <GROUPING> <SCAFFOLD ID = "scaff_18"> <CONTIG ID = "contig_asm_10" X = "0" ORI = "BE" ></CONTIG> <CONTIG ID = "contig_asm_2" X = "5213" ORI = "BE" ></CONTIG> <CONTIG ID ...) (current)
- 20:53, 8 July 2009 (diff | hist) . . (+276,874) . . N Bambus.evidence.xml (New page: <?xml version="1.0" ?> <EVIDENCE ID="project_1" DATE="Tue Nov 12 10:53:39 EST 2002" PROJECT="catXML" PARAMETERS="blah.detective.xml" > <LIBRARY...)
- 20:53, 8 July 2009 (diff | hist) . . (+59) . . N Bambus.mates (New page: library small 2000 4000 (....).* pair (.*)\.x1$ (.*)\.y1$) (current)
- 20:52, 8 July 2009 (diff | hist) . . (+465) . . N Bambus.conf (New page: priority lib_BAAA 1 priority lib_BAAB 1 priority lib_BAAC 1 priority lib_BABA 1 priority lib_BAAD 1 priority lib_BABB 1 priority lib_BAAE 1 priority lib_BABC 1 priority lib_BABD 1...) (current)
- 20:02, 8 July 2009 (diff | hist) . . (+125) . . Bambus Manual
- 19:58, 8 July 2009 (diff | hist) . . (+316) . . Bambus Manual
- 19:52, 8 July 2009 (diff | hist) . . (+194) . . Bambus Manual
- 19:41, 8 July 2009 (diff | hist) . . (0) . . Bambus Manual
- 19:41, 8 July 2009 (diff | hist) . . (0) . . N File:Bambus-display.jpg (current)
- 19:39, 8 July 2009 (diff | hist) . . (+28) . . Bambus Manual
- 19:38, 8 July 2009 (diff | hist) . . (0) . . N File:Scaffold image.gif (current)
- 19:37, 8 July 2009 (diff | hist) . . (+72) . . Bambus Manual
- 19:36, 8 July 2009 (diff | hist) . . (+19) . . Bambus
- 19:34, 8 July 2009 (diff | hist) . . (+2) . . Bambus
- 19:33, 8 July 2009 (diff | hist) . . (-18) . . Bambus
- 19:33, 8 July 2009 (diff | hist) . . (+38) . . Bambus
- 19:32, 8 July 2009 (diff | hist) . . (+26) . . Bambus
- 19:31, 8 July 2009 (diff | hist) . . (0) . . N File:BambusLogo.jpg (current)
- 19:28, 8 July 2009 (diff | hist) . . (+6) . . Bambus Manual
- 19:26, 8 July 2009 (diff | hist) . . (+714) . . Bambus Manual
- 19:13, 8 July 2009 (diff | hist) . . (-23) . . Bambus Manual
- 19:02, 8 July 2009 (diff | hist) . . (+27,858) . . N Bambus Manual (New page: == Introduction == The output of most shotgun sequence assembly programs (such as TIGR Assembler, phrap, or CAP3) consists in a set of un-related contigs, whose order and orientation alon...)
- 18:58, 8 July 2009 (diff | hist) . . (-72) . . Bambus
- 18:53, 8 July 2009 (diff | hist) . . (+1,037) . . N ABBA (New page: ABBA: Assembly Boosted By Amino acid sequences == Overview == Assembly Boosted By Amino acid sequence is a comparative gene assembler, which uses amino acid sequences from predicted prot...)
- 18:51, 8 July 2009 (diff | hist) . . (+54) . . AMOS
- 18:50, 8 July 2009 (diff | hist) . . (-6) . . ToAmos
- 18:50, 8 July 2009 (diff | hist) . . (+2,657) . . N ToAmos (New page: toAmos: converter from various types of inputs to AMOS messages == Overview == toAmos is primarily designed for converting the output of an assembly program into the AMOS format so that...)
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