Bank_AMOS.hh File Reference

Header for Bank_t. More...

#include "utility_AMOS.hh"
#include "IDMap_AMOS.hh"
#include <cstdlib>
#include <string>
#include <fstream>
#include <vector>
#include <deque>

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Namespaces
namespace	AMOS
Classes
class	AMOS::IBankable_t
	Interface for classes that can be stored in an AMOS bank. More...
class	AMOS::Bank_t
	An AMOS data bank for efficiently storing Bankable data types. More...
class	AMOS::Bank_t::BankPartition_t
	A single partition of the file-based bank. More...
Defines
#define	__Bank_AMOS_HH   1
Typedefs
typedef uint8_t	AMOS::BankMode_t
Functions
bool	AMOS::BankExists (NCode_t ncode, const std::string &dir)
	Checks for the accessibility of a bank with certain type.
void	AMOS::PrintBankVersion (const char *s)
	Prints the bank version a program is compatible with.
Variables
const BankMode_t	AMOS::B_READ = 0x1
	protected reading mode
const BankMode_t	AMOS::B_WRITE = 0x2
	protected writing mode
const BankMode_t	AMOS::B_SPY = 0x4
	unprotected reading mode, overrides all other modes

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Detailed Description

Header for Bank_t.

Author:

Adam M Phillippy

Date:

07/18/2003

Definition in file Bank_AMOS.hh.

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Define Documentation

#define __Bank_AMOS_HH   1

Note:

In an effort to ensure the binary-compatibility of AMOS banks all disk I/O should be independent of any system-dependent sizes or byte orders (endian-ness), such as 'int' which can vary in size and be stored in either big- or little-endian byte order. To avoid these issues, use only types with known sizes (int32_t for example) and read/write atomic data with the readLE and writeLE methods which convert strongly-typed ints to and from little-endian byte order before reading/writing.

Definition at line 20 of file Bank_AMOS.hh.

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