#include "Contig_AMOS.hh"
#include "Read_AMOS.hh"
#include <map>
#include <list>
#include <vector>
#include <string>
#include <queue>
#include <functional>
Include dependency graph for ContigIterator_AMOS.hh:
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Go to the source code of this file.
Namespaces | |
| namespace | AMOS |
Classes | |
| class | AMOS::TiledRead_t |
| A read within a contig "rendered" with gaps inserted. More... | |
| struct | AMOS::TileOrderCmp |
| A binary function for determining the canonical sort order for reads. More... | |
| class | AMOS::BaseStats_t |
| Maintains statistics the Column_t about reads which share the same base at the current position. More... | |
| struct | AMOS::BaseStatsCmp |
| Functor for sorting BaseStats_t by count of reads of each base, then cumqv, then maxqv. More... | |
| class | AMOS::Column_t |
| Maintains data on reads at a given contig position. More... | |
| class | AMOS::ContigIterator_t |
| Used for iterating through a contig on a per-consensus position basis. More... | |
| struct | AMOS::ContigIterator_t::ReadListItEndCmp |
| Sort operator for maintain end position queue. | |
Defines | |
| #define | CONTIG_ITERATOR_HH 1 |
Typedefs | |
| typedef std::list< TiledRead_t > | AMOS::TiledReadList_t |
Definition in file ContigIterator_AMOS.hh.
| #define CONTIG_ITERATOR_HH 1 |
Definition at line 13 of file ContigIterator_AMOS.hh.
1.4.7