datatypes_AMOS.cc

Go to the documentation of this file.

#include "datatypes_AMOS.hh"
#include <sstream>
using namespace AMOS;
using namespace std;




//================================================ Distribution_t ==============
const NCode_t Distribution_t::NCODE = M_DISTRIBUTION;


//----------------------------------------------------- readMessage ------------
void Distribution_t::readMessage (const Message_t & msg)
{
  clear( );

  try {
    istringstream ss;

    ss . str (msg . getField (F_MEAN));
    ss >> mean;
    if ( !ss )
      AMOS_THROW_ARGUMENT ("Invalid mean format");
    ss . clear( );

    ss . str (msg . getField (F_SD));
    ss >> sd;
    if ( !ss )
      AMOS_THROW_ARGUMENT ("Invalid standard deviation format");
    ss . clear( );
  }
  catch (ArgumentException_t) {
    
    clear( );
    throw;
  }
}


//--------------------------------------------------- readRecord -------------
void Distribution_t::readRecord (std::istream & in)
{
  readLE (in, &mean);
  readLE (in, &sd);
}


//----------------------------------------------------- writeMessage -----------
void Distribution_t::writeMessage (Message_t & msg) const
{
  msg . clear( );

  try {
    ostringstream ss;

    msg . setMessageCode (Distribution_t::getNCode( ));

    ss << mean;
    msg . setField (F_MEAN, ss . str( ));
    ss . str (NULL_STRING);

    ss << sd;
    msg . setField (F_SD, ss . str( ));
    ss . str (NULL_STRING);
  }
  catch (ArgumentException_t) {

    msg . clear( );
    throw;
  }
}


//--------------------------------------------------- writeRecord ------------
void Distribution_t::writeRecord (std::ostream & out) const
{
  writeLE (out, &mean);
  writeLE (out, &sd);
}




//================================================ Tile_t ======================
const NCode_t Tile_t::NCODE = M_TILE;


//----------------------------------------------------- clear ------------------
void Tile_t::clear ( )
{
  source = NULL_ID;
  gaps . clear( );
  offset = 0;
  range . clear( );
}


//----------------------------------------------------- readMessage ------------
void Tile_t::readMessage (const Message_t & msg)
{
  clear( );

  try {
    Pos_t gap;
    istringstream ss;

    if ( msg . exists (F_SOURCE) )
      {
        ss . str (msg . getField (F_SOURCE));
        ss >> source;
        if ( !ss )
          AMOS_THROW_ARGUMENT ("Invalid source link format");
        ss . clear( );
      }

    if ( msg . exists (F_OFFSET) )
      {
        ss . str (msg . getField (F_OFFSET));
        ss >> offset;
        if ( !ss )
          AMOS_THROW_ARGUMENT ("Invalid offset format");
        ss . clear( );
      }

    if ( msg . exists (F_CLEAR) )
      {
        ss . str (msg . getField (F_CLEAR));
        ss >> range . begin;
        ss . ignore( );
        ss >> range . end;
        if ( !ss )
          AMOS_THROW_ARGUMENT ("Invalid clear range format");
        ss . clear( );
      }

    if ( msg . exists (F_GAPS) )
      {
        ss . str (msg . getField (F_GAPS));

        while ( ss )
          {
            ss >> gap;
            if ( ! ss . fail( ) )
              gaps . push_back (gap);
          }

        if ( !ss . eof( ) )
          AMOS_THROW_ARGUMENT ("Invalid gaps format");
        ss . clear( );
      }
  }
  catch (ArgumentException_t) {
    
    clear( );
    throw;
  }
}


//----------------------------------------------------- readRecord -------------
void Tile_t::readRecord (istream & in)
{
  Size_t size;

  readLE (in, &size);
  gaps . resize (size);
  for ( Pos_t i = 0; i < size; i ++ )
    readLE (in, &(gaps [i]));
  readLE (in, &source);
  readLE (in, &offset);
  readLE (in, &(range . begin));
  readLE (in, &(range . end));
}


//----------------------------------------------------- writeMessage -----------
void Tile_t::writeMessage (Message_t & msg) const
{
  msg . clear( );

  try {
    vector<Pos_t>::const_iterator vi;
    ostringstream ss;

    msg . setMessageCode (Tile_t::getNCode( ));

    if ( source != NULL_ID )
      {
        ss << source;
        msg . setField (F_SOURCE, ss . str( ));
        ss . str (NULL_STRING);
      }

    ss << offset;
    msg . setField (F_OFFSET, ss . str( ));
    ss . str (NULL_STRING);

    ss << range . begin << ',' << range . end;
    msg . setField (F_CLEAR, ss . str( ));
    ss . str (NULL_STRING);

    if ( !gaps . empty( ) )
      {
        for ( vi = gaps . begin( ); vi != gaps . end( ); vi ++ )
          ss << *vi << '\n';
        msg . setField (F_GAPS, ss . str( ));
        ss . str (NULL_STRING);
      }
  }
  catch (ArgumentException_t) {

    msg . clear( );
    throw;
  }
}


//----------------------------------------------------- writeRecord ------------
void Tile_t::writeRecord (ostream & out) const
{
  Size_t size = gaps . size( );

  writeLE (out, &size);
  for ( Pos_t i = 0; i < size; i ++ )
    writeLE (out, &(gaps [i]));
  writeLE (out, &source);
  writeLE (out, &offset);
  writeLE (out, &(range . begin));
  writeLE (out, &(range . end));
}




//================================================ Helper Functions ============
//----------------------------------------------------- operator& --------------
Range_t AMOS::operator& (Range_t a, Range_t b)
{
  if ( a . begin > a . end )
    {
      Pos_t tmp = a . begin;
      a . begin = a . end;
      a . end = tmp;
    }

  if ( b . begin > b . end )
    {
      Pos_t tmp = b . begin;
      b . begin = b . end;
      b . end = tmp;
    }

  if ( a . begin >= b . end  ||  a . end <= b . begin )
    return Range_t (0,0);
  else if ( a . begin < b . begin )
    return Range_t (b . begin, a . end < b . end ? a . end : b . end);
  else
    return Range_t (a . begin, a . end < b . end ? a . end : b . end);
}


//----------------------------------------------------- operator| --------------
Range_t AMOS::operator| (Range_t a, Range_t b)
{
  if ( a . begin > a . end )
    {
      Pos_t tmp = a . begin;
      a . begin = a . end;
      a . end = tmp;
    }

  if ( b . begin > b . end )
    {
      Pos_t tmp = b . begin;
      b . begin = b . end;
      b . end = tmp;
    }

  if ( a . begin >= b . end  ||  a . end <= b . begin )
    return Range_t (0,0);
  else
    return Range_t (a . begin < b . begin ? a . begin : b . begin,
                    a . end > b . end ? a . end : b . end);
}


//----------------------------------------------------- operator== -------------
bool AMOS::operator== (const Range_t & a, const Range_t & b)
{
  return ( a . begin == b . begin  &&  a . end == b . end );
}
bool AMOS::operator!= (const Range_t & a, const Range_t & b)
{
  return !(a == b);
}


//----------------------------------------------------- operator== -------------
bool AMOS::operator== (const Distribution_t & a, const Distribution_t & b)
{
  return ( a . mean == b . mean  &&
           a . sd == b . sd );
}
bool AMOS::operator!= (const Distribution_t & a, const Distribution_t & b)
{
  return !(a == b);
}


//----------------------------------------------------- operator== -------------
bool AMOS::operator== (const Tile_t & a, const Tile_t & b)
{
  return ( a . source == b . source  &&
           a . gaps == b . gaps  &&
           a . offset == b . offset  &&
           a . range == b . range );
}
bool AMOS::operator!= (const Tile_t & a, const Tile_t & b)
{
  return !(a == b);
}


//----------------------------------------------------- WrapStirng -------------
void AMOS::WrapString (ostream & out, const string & s, int per)
{
  int  i, n;
  
  n = s . size ( );
  for  (i = 0;  i < n;  i += per)
    {
      int  j, last;
      
      last = i + per;
      if  (n < last)
        last = n;
      for  (j = i;  j < last;  j ++)
        out << s [j];
      out << endl;
    }
}

---