exceptions_AMOS.hh File Reference

Include file for all of the AMOS exception types. More...

#include "inttypes_AMOS.hh"
#include <string>
#include <exception>
#include <iostream>

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Namespaces
namespace	AMOS
Classes
class	AMOS::Exception_t
	The base AMOS excpetion class. More...
class	AMOS::AlignmentException_t
	An exception for alignment failures. More...
class	AMOS::AllocException_t
	An exception for alloc failures, better than std::bad_alloc. More...
class	AMOS::ArgumentException_t
	An exception for invalid arguments. More...
class	AMOS::IOException_t
	An exception for IO errors. More...
Defines
#define	__exceptions_AMOS_HH   1
#define	AMOS_THROW(A)   throw Exception_t(A,__LINE__,__FILE__)
#define	AMOS_THROW_ALLOC(A)   throw AllocException_t(A,__LINE__,__FILE__)
#define	AMOS_THROW_ARGUMENT(A)   throw ArgumentException_t(A,__LINE__,__FILE__)
#define	AMOS_THROW_IO(A)   throw IOException_t(A,__LINE__,__FILE__)
Functions
std::ostream &	AMOS::operator<< (std::ostream &out, const Exception_t &e)
	Dump Exception_t info to an ostream.
std::ostream &	AMOS::operator<< (std::ostream &out, const std::exception &e)
	Dump exception info to an ostream.

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Detailed Description

Include file for all of the AMOS exception types.

Author:

Adam M Phillippy

Date:

10/17/2003

Definition in file exceptions_AMOS.hh.

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Define Documentation

#define __exceptions_AMOS_HH   1

Definition at line 11 of file exceptions_AMOS.hh.

#define AMOS_THROW

(

A

)

throw Exception_t(A,__LINE__,__FILE__)

Definition at line 273 of file exceptions_AMOS.hh.

Referenced by AMOS::IDMap_t::resize(), and AMOS::BankStream_t::seekg().

#define AMOS_THROW_ALLOC

(

A

)

throw AllocException_t(A,__LINE__,__FILE__)

Definition at line 274 of file exceptions_AMOS.hh.

Referenced by AMOS::SafeCalloc(), AMOS::SafeMalloc(), AMOS::SafeRealloc(), and AMOS::SafeStrdup().

#define AMOS_THROW_ARGUMENT

(

A

)

throw ArgumentException_t(A,__LINE__,__FILE__)

Definition at line 275 of file exceptions_AMOS.hh.

Referenced by AMOS::Bank_t::appendBID(), AMOS::Kmer_t::compress(), AMOS::Bank_t::concat(), AMOS::Bank_t::fetchBID(), AMOS::Bank_t::fetchBIDFix(), AMOS::Sequence_t::getBase(), AMOS::Kmer_t::getBase(), AMOS::Message_t::getField(), AMOS::Contig_t::getGCContent(), AMOS::Sequence_t::getQualString(), AMOS::Sequence_t::getSeqString(), AMOS::Contig_t::getUngappedQualString(), AMOS::Contig_t::getUngappedSeqString(), AMOS::Contig_t::insertGapColumn(), AMOS::Bank_t::lookupBID(), AMOS::BankStream_t::operator<<(), AMOS::BankStream_t::operator>>(), AMOS::BankStreamSet_t::operator[](), AMOS::BankSet_t::operator[](), AMOS::UniversalSet_t::operator[](), AMOS::Universal_t::readMessage(), AMOS::Sequence_t::readMessage(), AMOS::Scaffold_t::readMessage(), AMOS::Read_t::readMessage(), AMOS::Overlap_t::readMessage(), AMOS::Link_t::readMessage(), AMOS::Kmer_t::readMessage(), AMOS::Index_t::readMessage(), AMOS::IDMap_t::readMessage(), AMOS::Group_t::readMessage(), AMOS::Fragment_t::readMessage(), AMOS::Feature_t::readMessage(), AMOS::IEdge_t::readMessage(), AMOS::Tile_t::readMessage(), AMOS::Distribution_t::readMessage(), AMOS::Bank_t::replaceBID(), AMOS::Overlap_t::setAdjacency(), AMOS::Link_t::setAdjacency(), AMOS::Sequence_t::setBase(), AMOS::Kmer_t::setBase(), AMOS::Bank_t::setMode(), AMOS::Sequence_t::setSequence(), AMOS::Read_t::setType(), AMOS::Link_t::setType(), AMOS::Fragment_t::setType(), AMOS::TiledRead_t::TiledRead_t(), and AMOS::Kmer_t::uncompress().

#define AMOS_THROW_IO

(

A

)

throw IOException_t(A,__LINE__,__FILE__)

Definition at line 276 of file exceptions_AMOS.hh.

Referenced by AMOS::Bank_t::appendBID(), AMOS::Bank_t::clean(), AMOS::Bank_t::clear(), AMOS::Bank_t::close(), AMOS::Bank_t::concat(), AMOS::Bank_t::destroy(), AMOS::Bank_t::fetchBID(), AMOS::Bank_t::fetchBIDFix(), AMOS::BankStream_t::ignore(), AMOS::Bank_t::lockIFO(), AMOS::Bank_t::openPartition(), AMOS::BankStream_t::operator<<(), AMOS::BankStream_t::operator>>(), AMOS::IDMap_t::read(), AMOS::Bank_t::removeBID(), AMOS::BankStream_t::removeByBID(), AMOS::Bank_t::replaceBID(), AMOS::BankStream_t::replaceByBID(), AMOS::BankStream_t::seekg(), AMOS::Bank_t::syncIFO(), and AMOS::Bank_t::unlockIFO().

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