utility_AMOS.hh File Reference

Include file for AMOS utilities, defines, inttypes and exceptions. More...

#include "inttypes_AMOS.hh"
#include "exceptions_AMOS.hh"
#include <new>
#include <cstdlib>
#include <cstring>
#include <iostream>
#include <cassert>
#include <errno.h>

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Namespaces
namespace	AMOS
Defines
#define	__utility_AMOS_HH   1
#define	HASHMAP   std
Functions
void *	AMOS::SafeCalloc (size_t num, size_t size)
	Safe calloc wrapper.
void *	AMOS::SafeMalloc (size_t size)
	Safe malloc wrapper.
void *	AMOS::SafeRealloc (void *P, size_t size)
	Safe realloc wrapper.
char *	AMOS::SafeStrdup (const char *str)
	Safe strdup wrapper.
char	AMOS::Complement (char ch)
	Returns the DNA complement of an IUPAC character.
void	AMOS::ReverseComplement (std::string &str)
	Takes the DNA reverse complement of an IUPAC string.
void	AMOS::ReverseComplement (char *str)
	Takes the DNA reverse complement of an IUPAC string.
void	AMOS::Reverse (std::string &str)
	Reverses the contents of a string.
void	AMOS::Reverse (char *str)
	Reverses the contents of a string.
void	AMOS::writeLE (std::ostream &out, const uint8_t *i)
	Writes an 8-bit int in little-endian byte order.
void	AMOS::writeLE (std::ostream &out, const int8_t *i)
void	AMOS::writeLE (std::ostream &out, const BankFlags_t *i)
void	AMOS::writeLE (std::ostream &out, const uint16_t *i)
	Writes a 16-bit int in little-endian byte order.
void	AMOS::writeLE (std::ostream &out, const int16_t *i)
void	AMOS::writeLE (std::ostream &out, const uint32_t *i)
	Writes a 32-bit int in little-endian byte order.
void	AMOS::writeLE (std::ostream &out, const int32_t *i)
void	AMOS::writeLE (std::ostream &out, const uint64_t *i)
	Writes a 64-bit int in little-endian byte order.
void	AMOS::writeLE (std::ostream &out, const int64_t *i)
void	AMOS::readLE (std::istream &in, uint8_t *i)
	Reads a little-endian 8-bit int.
void	AMOS::readLE (std::istream &in, int8_t *i)
void	AMOS::readLE (std::istream &in, BankFlags_t *i)
void	AMOS::readLE (std::istream &in, uint16_t *i)
	Reads a little-endian 16-bit int.
void	AMOS::readLE (std::istream &in, int16_t *i)
void	AMOS::readLE (std::istream &in, uint32_t *i)
	Reads a little-endian 32-bit int.
void	AMOS::readLE (std::istream &in, int32_t *i)
void	AMOS::readLE (std::istream &in, uint64_t *i)
	Reads a little-endian 64-bit int.
void	AMOS::readLE (std::istream &in, int64_t *i)

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Detailed Description

Include file for AMOS utilities, defines, inttypes and exceptions.

Author:

Adam M Phillippy

Date:

07/27/2004

Definition in file utility_AMOS.hh.

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Define Documentation

#define __utility_AMOS_HH   1

Definition at line 11 of file utility_AMOS.hh.

#define HASHMAP   std

Definition at line 44 of file utility_AMOS.hh.

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