utility_AMOS.cc File Reference

Source for utility_AMOS.hh. More...

#include "utility_AMOS.hh"
#include <algorithm>
#include <cstring>

Include dependency graph for utility_AMOS.cc:

Go to the source code of this file.

Functions
char	AMOS::Complement (char ch)
	Returns the DNA complement of an IUPAC character.
void	AMOS::ReverseComplement (string &str)
void	AMOS::ReverseComplement (char *str)
	Takes the DNA reverse complement of an IUPAC string.
void	AMOS::Reverse (string &str)
void	AMOS::Reverse (char *str)
	Reverses the contents of a string.
Variables
const char	COMPLEMENT_DNA [256]

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Detailed Description

Source for utility_AMOS.hh.

Author:

Adam M Phillippy

Date:

04/18/2005

Definition in file utility_AMOS.cc.

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Variable Documentation

const char COMPLEMENT_DNA[256]

Initial value:

  {
      0,  1,  2,  3,  4,  5,  6,  7,  8,  9, 10, 11, 12, 13, 14, 15,
     16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31,
     32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47,
     48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63,
     64,'T','V','G','H', 69, 70,'C','D', 73, 74,'M', 76,'K','N', 79,
     80, 81,'Y','S','A', 85,'B','W','X','R', 90, 91, 92, 93, 94, 95,
     96,'t','v','g','h',101,102,'c','d',105,106,'m',108,'k','n',111,
    112,113,'y','s','a',117,'b','w','x','r',122,123,124,125,126,127,
    128,129,130,131,132,133,134,135,136,137,138,139,140,141,142,143,
    144,145,146,147,148,149,150,151,152,153,154,155,156,157,158,159,
    160,161,162,163,164,165,166,167,168,169,170,171,172,173,174,175,
    176,177,178,179,180,181,182,183,184,185,186,187,188,189,190,191,
    192,193,194,195,196,197,198,199,200,201,202,203,204,205,206,207,
    208,209,210,211,212,213,214,215,216,217,218,219,220,221,222,223,
    224,225,226,227,228,229,230,231,232,233,234,235,236,237,238,239,
    240,241,242,243,244,245,246,247,248,249,250,251,252,253,254,255
  }

Definition at line 17 of file utility_AMOS.cc.

Referenced by AMOS::Complement(), and AMOS::ReverseComplement().

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