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Read_AMOS.hh File Reference

Header for Read_t. More...

#include "Sequence_AMOS.hh"
#include <vector>

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Namespaces

namespace  AMOS

Classes

class  AMOS::Read_t
 A DNA sequencing read. More...

Defines

#define __Read_AMOS_HH   1

Typedefs

typedef char ReadType_t

Functions

std::ostream & operator<< (std::ostream &o, Read_t &read)
 Dump read object to ostream.


Detailed Description

Header for Read_t.

Author:
Adam M Phillippy
Date:
06/18/2003

Definition in file Read_AMOS.hh.


Define Documentation

#define __Read_AMOS_HH   1
 

Definition at line 11 of file Read_AMOS.hh.


Typedef Documentation

typedef char AMOS::ReadType_t
 

Definition at line 21 of file Read_AMOS.hh.

Referenced by AMOS::Read_t::getType(), and AMOS::Read_t::setType().


Function Documentation

ostream & AMOS::operator<< std::ostream &  o,
Read_t read
 

Dump read object to ostream.

Definition at line 269 of file Read_AMOS.cc.

References AMOS::Range_t::begin, AMOS::Range_t::end, AMOS::Read_t::getClearRange(), AMOS::Universal_t::getComment(), AMOS::IBankable_t::getIID(), AMOS::Sequence_t::getQualString(), AMOS::Sequence_t::getSeqString(), and AMOS::WrapString().


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