datatypes_AMOS.hh File Reference

Include file for some simple AMOS type definitions and structs. More...

#include "Message_AMOS.hh"
#include <vector>
#include <string>

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Namespaces
namespace	AMOS
Classes
struct	AMOS::Distribution_t
	A set of statistics that define a distribution. More...
struct	AMOS::Range_t
	A gapped coordinate range. More...
struct	AMOS::Tile_t
	A singe sequence's location and orientation in a larger sequence. More...
Defines
#define	__datatypes_AMOS_HH   1
Typedefs
typedef Range_t	Ordered_Range_t
Functions
Range_t	operator & (Range_t a, Range_t b)
	An intersection operator for Ranges.
Range_t	operator| (Range_t a, Range_t b)
	A union operator for Ranges.
bool	operator== (const Range_t &a, const Range_t &b)
	An equality operator for Ranges.
bool	operator!= (const Range_t &a, const Range_t &b)
bool	operator== (const Distribution_t &a, const Distribution_t &b)
	An equality operator for Distributions.
bool	operator!= (const Distribution_t &a, const Distribution_t &b)
bool	operator== (const Tile_t &a, const Tile_t &b)
	An equality operator for Tiles.
bool	operator!= (const Tile_t &a, const Tile_t &b)
void	WrapString (std::ostream &out, const std::string &s, int per)
	Inserts a newline every 'per' characters when writing to stream.

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Detailed Description

Include file for some simple AMOS type definitions and structs.

Author:

Adam M Phillippy

Date:

06/16/2003

These are objects that cannot be stored by themselves in a Bank, however are capable of writing messages and records. Mostly used as ID-less submessages.

Definition in file datatypes_AMOS.hh.

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Define Documentation

#define __datatypes_AMOS_HH   1

Definition at line 15 of file datatypes_AMOS.hh.

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Typedef Documentation

typedef Range_t AMOS::Ordered_Range_t

Definition at line 453 of file datatypes_AMOS.hh.

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Function Documentation

Range_t AMOS::operator & (  Range_t  a, Range_t  b )

An intersection operator for Ranges. Returns the (foward) intersection of two overlapping ranges. Parameters: a  Range A b  Range B Returns: The intersection of Range A and B or [0,0) if no overlap Definition at line 253 of file datatypes_AMOS.cc. References AMOS::Pos_t.

bool AMOS::operator!= (  const Tile_t &  a, const Tile_t &  b )

Definition at line 334 of file datatypes_AMOS.cc.

bool AMOS::operator!= (  const Distribution_t &  a, const Distribution_t &  b )

Definition at line 320 of file datatypes_AMOS.cc.

bool AMOS::operator!= (  const Range_t &  a, const Range_t &  b )

Definition at line 308 of file datatypes_AMOS.cc.

bool AMOS::operator== (  const Tile_t &  a, const Tile_t &  b )

An equality operator for Tiles. Returns true if distributions have identical values Parameters: a  Tile A b  Tile B Returns: true if distributions have identical values Definition at line 327 of file datatypes_AMOS.cc.

bool AMOS::operator== (  const Distribution_t &  a, const Distribution_t &  b )

An equality operator for Distributions. Returns true if distributions have identical values Parameters: a  Distribution A b  Distribution B Returns: true if distributions have identical values Definition at line 315 of file datatypes_AMOS.cc.

bool AMOS::operator== (  const Range_t &  a, const Range_t &  b )

An equality operator for Ranges. Returns true if the two ranges have equal begin and end values. Parameters: a  Range A b  Range B Returns: true if a.begin == b.begin && a.end == b.end, else false Definition at line 304 of file datatypes_AMOS.cc.

Range_t AMOS::operator| (  Range_t  a, Range_t  b )

A union operator for Ranges. Returns the union of two overlapping ranges Parameters: a  Range A b  Range B Returns: The union of Range A and B or [0,0) if no overlap Definition at line 279 of file datatypes_AMOS.cc. References AMOS::Pos_t.

void AMOS::WrapString (  std::ostream &  out, const std::string &  s, int  per )

Inserts a newline every 'per' characters when writing to stream. Definition at line 341 of file datatypes_AMOS.cc. Referenced by AMOS::operator<<().

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